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HISTORY.txt
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HISTORY.txt
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# PDBX_MMCIF HISTORY
1-Aug-2017 - Initial Git Migration
15-Jan-2018 - Python packaging overhaul
4-Apr-2018 - V0.12 - remove some deprecated code and a few api extensions
26-Jun-2018 - V0.13 - add missing method code accessors
9-Jul-2018 - V0.14 - preliminary Py37 support, add coverage and code style tests
26-Jul-2018 - V0.15 - further changes to support Py2/Py3 compatibility in dictionary API module
6-Aug-2018 - V0.16 - Add methods to set and get generic properties on base containers.
8-Aug-2018 - V0.17 - Add support for Ubuntu 16.04.5 & GCC 5.4
10-Aug-2018 - V0.18 - Detect uncompress gz, bz2, xz and zip input files
25-Aug-2018 - V0.19 - Record the compressed file names and fix tox coverage test runner
9-Sep-2018 - V0.20 - Adjust return types for failing Container and DataCategory methods
Add implicit method execution priority based method order in category method_list.
4-Oct-2018 - V0.21 - Add optional method parameter returnCount=0 to selectValueListWhere()
12-Oct-2018 - V0.22 - Update language binding code
19-Oct-2018 - V0.23 - Add dictionary definition Markdown rendering example
29-Oct-2018 - V0.24 - Add support for legacy CifFile() API
11-Nov-2018 - V0.25 - Update DataCategory/DataCategoryBase with more consistent handling of raiseExceptions flag,
and harmonize selection of temporary and log file paths.
27-Nov-2018 - V0.26 - Adjust exception handling in IoCoreAdapter().
29-Nov-2018. - V0.27 - Add explicit option to better control read encoding errors separate from ascii encoding errors.
7-Dec-2018 V0.28 - Add constructor parameter replaceDefinition=False to allow replacing
definitions during consolidation
27-Jan-2019 V0.29 - Add row dictionary initialization, append, and extend methods
28-Jan-2019 V0.30 - Relax attribute coverage requirements on dictionary initialization
2-Feb-2019 V0.31 - Adjust formatting removing spurious comments and newlines and API method getFullDescendentList()
5-Feb-2019 V0.32 - Add container merge method.
7-Feb-2019 V0.33 - Adjust initialization error checking to allow empty list
12-Feb-2019 V0.34 - Back off some reformatting from V32.
11-Mar-2019 V0.35 - Add method getAttributeUniqueValueList().
12-Apr-2019 V0.36 - Add dictionary api methods getItemSubCategoryLabelList() and getItemSubCategoryList()
5-May-2019 V0.37 - Add selectValuesWhereConditions() and countValuesWhereConditions()
26-May-2019 V0.38 - Extend method API to support DDL 2.2.1 extensions
5-Jun-2019 V0.39 - Incorporate DictMethodRunner class change test naming conventions
28-Jun-2019 V0.40 - Update development workflows and cleanup
22-Jul-2019 V0.41 - Update arguments in DictMethodRunner()
28-Jul-2019 V0.42 - Suppress sorting of attribute and category order in DictionaryApi()
7-Aug-2019 V0.43 - Suppress raising exceptions for getValueOrDefault() methods.
13-Aug-2019 V0.44 - Add placeholder test method for DictionaryApi().
16-Aug-2019 V0.45 - Improve handling of dictionary and dictionary history categories for concatenated dictionaries.
28-Aug-2019 V0.46 - Add unique identifier properties to each container
7-Oct-2019 V0.47 - Adjust error handling in IoAdapterCore()
7-Oct-2019 V0.48 - Exclude setup.py to avoid odd pylint crash.
23-Nov-2019 V0.49 - Move pipeline to py38
29-Nov-2019 V0.50 - Improve error diagnostics for missing methods, adjust parameter values for block methods.
15-Feb-2020 V0.51 - Add support for category group hierarchies.
9-May-2020 V0.52 - Make reserved token quoting case insensitive (PR from E. Ezra Peisach)
18-May-2020 V0.53 - Add DataCategory method countValuesWhereOpConditions() and test cases.
18-May-2020 V0.54 - Add DataCategory another method getCombinationCountsWithConditions() and test cases.
5-Jun-2020 V0.55 - Add support for extended enumeration description and units
5-Jun-2020 V0.56 - Address Py27 compatibility issues
5-Jun-2020 V0.57 - Extend support for extended enumeration description and units for alt enumerations
23-Aug-2020 V0.58 - Adjustments for the latest pylint and installation of dependencies for documentation generator
23-Aug-2020 V0.59 - Py27 adjustments
1-Jan-2021 V0.60 - Advance pipeline to py39 add DDL category.NX_mapping_details
1-Jan-2021 V0.61 - Adjust method api for category.NX_mapping_details
30-Mar-2021 V0.62 - Adding support for pdbx_include_dictionary, pdbx_include_category, pdbx_include_item,
pdbx_dictionary_component and pdbx_dictionary_component_history; allow URL locators in IoAdapterPy()
7-Apr-2021 V0.63 - Add support for conditional value and conditional link attributes and data
8-Apr-2021 V0.64 - Add --cleanup option to build_dict_cli, update documentation and dependencies.
8-Apr-2021 V0.65 - Make --cleanup work with nested include instructions
17-Apr-2021 V0.66 - Add support for reading remote text and gzipped files in IoPyAdapter()
17-Apr-2021 V0.67 - Update support for Py27 with IoPyAdapter() tests
10-May-2021 V0.68 - Extend time precision in IoAdapterBase()
16-May-2021 V0.69 - Add BinaryCifReader/BinaryCifWriter, add mkdocs support, overhaul setup.py
2-Jun-2021 V0.70 - Add removeDuplicateRows() method in DataCategoryBase()
21-Jul-2021 V0.71 - Update ccp-cif-file module with support for new DDL attributes.
21-Jul-2021 V0.72 - Improve error handling for remote cif reader in IoAdapterPy()
28-Sep-2021 V0.73 - Ignore decoding errors on read by default in IoAdapterPy.readFile()
5-Oct-2021 V0.74 - Add support for relative local paths with DictionaryInclude()
11-Oct-2021 V0.75 - Add the dictionary API instance as a keyword argument to any invoked method in DictMethodRunner()
06-Apr-2022 V0.76 - Add doubleQuotingFlag parameter in IoAdapterCore.writeFile() method
08-Aug-2022 V0.77 - Upgrade macOS version for Azure and tox tasks
04-Sep-2022 V0.78 - Ensure that data values starting with "stop_" are quoted. Pull in latest versions of modules.
05-Sep-2022 V0.79 - For IoAdapterPy readFile() method, support timeout parameter for remote URLs
04-Dec-2022 V0.80 - Add support for Python 3.11
04-Dec-2022 V0.80.1 - Correct non-wheel build of legacy python
08-Apr-2023 V0.81 - When using C++ writer, a string with a tab in middle with no other whitespace must be quoted
5-Dec-2023 V0.82 - Add support for binary mmCIF (BCIF) reading and writing in IoAdapterPy
21-Dec-2023 V0.83 - Update wheel builds for Apple Silicon (arm64).
2-Jan-2024 V0.84 - Updates to error suppression flags for undefined attribute types in BCIF conversion (set default to on)
16-Jan-2024 V0.85.0 - Update BinaryCifReader to read in DataCategory data items into lists instead of tuples;
Update BinaryCifWriter to set version tag to that of the active mmcif package installation,
to enable compatibility with Mol* and other tools (which requires >= 0.3.0, in that format);
Update package version format to `major.minor.patch` (!!! MUST USE THIS FORMAT MOVING FORWARD !!!)
17-Jan-2024 V0.85.1 - Set BinaryCIF version tag to specifically 0.3.0 to ensure compatibility with Mol* and other tools
23-Feb-2024 V0.86.0 - BinaryCIF writer properly tracks integer types to ensure
proper types passed through encoders. Ensure compatibility with ciftools-java and Mol*.
6-Apr-2024 V0.87.0 - Correct internal data of PdbxContainers when rename operation is used
24-Apr-2024 V0.88.0 - Add copy method to PdbxContainers for copying entire categories;
Update rename method to fail if new category name already exists (i.e., don't allow overwrite)
20-Jun-2024 V0.89.0 - When writing output cif, always quote strings that start global_
25-Oct-2024 V0.90.0 - Use explicit item type map to determine field types and encodings for BCIF