In academia and science, but really anywhere, we can encounter many sources of stress (some examples below). We all deal with it in different ways and this MBSR course is just one that I’m liking right now and recommend. If there’s no course near you, check out the Full Catastrophe Living book that my course is based on1.
All these tweets are threads, so you’ll have to open them to see them: click on the blue bird on the right side of each tweet.
-{{% tweet "1005618536100683777" %}} -{{% tweet "1004798860835938305" %}} -{{% tweet "1004478330257707008" %}} +{{% tweet user="BryonyDuPont" id="1005618536100683777" %}} +{{% tweet user="daniela_oaks" id="1004798860835938305" %}} +{{% tweet user="lcolladotor" id="1004478330257707008" %}}One of the exercises on our silent retreat was mindful eating. That is, eating slowly and focusing on our senses while eating food. This involved smelling the food, seeing all the colors it has, feeling all the different textures, and focusing on its taste. Plus, not talking to anyone. I had bought a lunch before the retreat (so I wouldn’t have to break the silence during it) that I normally don’t find interesting: some fruit and a chicken curry wrap from CVS. But wow, it was amazing that day! I greatly enjoyed how it tasted and all the different sensations I felt. I couldn’t believe it was the same food I had eaten other times before without much excitement.
Lately I’ve been processing some strong feelings related to feeling unwelcome, homesickness and loneliness. I’m doing many things that I know help me, starting with talking about them with my family. I’ve also been keeping myself busy doing some sports outside, going to events, bars, having friends over, etc. But what motivated me to write this post today is that after lunch I left really bad today. I had to go outside and try to calm myself.
I thought I did, returned to work, and nah, I couldn’t do it today. So I went home, rested in my room in the dark, and I find myself finishing this post about 2 hours later. I’m not sure it’s related to the MSBR course, but I’m wondering if the mindfulness practice is also opening my mind’s ears and eyes to my inner feelings way more than normal2. I don’t think it’s bad. It’s just that it’s way harder to enjoy this process than it was eating a lunch. I’m trying to feel happy because I have feelings and I’m recognizing them. My family is also happy because they view it as a part of maturing and that I’m getting ready for taking another step in my life.
Just some things are taking me way more time than normal. For example, it took me 2 days to process what I wanted to reply to a tweet and how to word it: it turned out well because I think we all heard each other ^^.
-{{% tweet "1006207918813958145" %}} +{{% tweet user="lcolladotor" id="1006207918813958145" %}}I also discovered that the silent retreat reminded me of vacations where I turn off my phone/email and spend a few days thinking about what’s next. I used to go to Mexico every 6 months or so during my PhD to recharge. I want to do it again, but I can’t. That lead me to my strong feelings of homesickness I had today.
Just to close, I’m OK. I appreciate all the support I have and I recommend others to learn about mindfulness. You might be missing out some super tasty lunches and/or an exploration trip towards your inner self.
I also want to add that I know some of you might see this post as over-sharing (yes, it might be). One reply is that I think that leaders also have to show their vulnerable sides. This has been debated a lot in academic twitter accounts in the context of showing your failures too, not just your successes.
diff --git a/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.Rmd b/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.Rmd index 7c30400..391115d 100644 --- a/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.Rmd +++ b/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.Rmd @@ -44,7 +44,7 @@ Today was a big day. I care about many things including diversity in science (ST This was a very important day for me. It was the beginning of the [Latin American R/BioConductor Developers Workshop 2018](https://comunidadbioinfo.github.io/post/r-bioconductor-developers-workshop-2018/) in Cuernavaca, Mexico. I already wrote a blog post about [why I was super excited about CDSBMexico](http://lcolladotor.github.io/2018/04/19/latin-american-r-bioconductor-developers-workshop-2018/#.W1-lhNhKi50), but briefly it's because this is something we've been wanting to see become a reality for years and have been working towards it. -`r blogdown::shortcode("tweet", "1023665229882961922")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1023665229882961922")` My job was to give the first keynote to pump up everyone at the workshop. So I had a bit of trouble sleeping and woke up remembering a dream. If you know me, I _never_ dream: or never remember my dreams. It was a dream of my grandmother Mercedes Vides Tovar. @@ -68,55 +68,55 @@ I did inherit her souvenirs from her trips (my dad also loves them) and somethin In my dream there was a moment where I was sitting next to her (me in my current adult form) and we were revising many of our shared moments. She was explaining to me things she couldn't explain before because I wouldn't have understood them. She also pumped me up before my day and wished me luck for my talk. I think that I delivered ^^ -`r blogdown::shortcode("tweet", "1023953817187090435")` +`r blogdown::shortcode("tweet", user="semiramis_cj", id="1023953817187090435")` ### WomenInStem Today was a big day for [WomenInSTEM](https://twitter.com/search?q=womeninstem) and in particular in the field of Statistics. Why? Today the Joint Statistical Meetings ([JSM2018](https://twitter.com/search?q=jsm2018)) held a session on "Addressing Sexual Misconduct in Statistics" that was organized by [Stephanie Hicks](https://twitter.com/stephaniehicks) and chaired by [Keegan Korthauer](https://twitter.com/keegankorthauer). -`r blogdown::shortcode("tweet", "1004467110918213637")` +`r blogdown::shortcode("tweet", user="stephaniehicks", id="1004467110918213637")` The session is not a direct response (I think) but it's definitely related to [Kristian Lum](https://twitter.com/KLdivergence)'s blog post titled [Statistics, we have a problem](https://medium.com/@kristianlum/statistics-we-have-a-problem-304638dc5de5) and to the more general [MeToo](https://twitter.com/search?q=metoo) movement. Sexual harassment and misconduct not a US problem only. We have a code of conduct at [CDSBMexico](https://twitter.com/CDSBMexico) both in [English](https://github.com/ComunidadBioInfo/R-BioConductor-Developers-Workshop-2018/blob/master/R-Bioconductor-2018_Program.rmd#code-of-conduct) and [Spanish](https://comunidadbioinfo.github.io/codigo-de-conducta/) to help prevent any issues. -`r blogdown::shortcode("tweet", "1024060403138142209")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="1024060403138142209")` I couldn't be there, but I wasn't the only one excited following what has happening online thanks to tweets from many including [Mandy Mejia](https://twitter.com/mandyfmejia) and [Michael Hoffman](https://twitter.com/michaelhoffman). -`r blogdown::shortcode("tweet", "1024042337033285632")` +`r blogdown::shortcode("tweet", user="mandyfmejia", id="1024042337033285632")` ### Times are changing I do think that slowly, maybe sometimes quickly, the times are changing. I've been telling friends and family for a few years now that I've come to realize that we need to keep trying to improve, to stay updated, to do what's best and maybe sometimes come up with new ideas to improve things. I do care quite a bit for [WomenInSTEM](https://twitter.com/search?q=womeninstem) but for me, it's larger than that. It's about diversity. I don't know in how many different ways we can label each other and it's not the point. So yes, gender diversity is a good thing and initiatives like this seem like a good thing to do: -`r blogdown::shortcode("tweet", "1024068383564853248")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1024068383564853248")` But then I think immediately of next steps, like race and ethnicity as well as sexual diversity. I want to ask for more, but I sometimes hold myself back. I'm no expert on many of these topics, so maybe what seems like a good policy could easily backfire later. So I think about incremental steps. But maybe that's too slow and not enough. Maybe careers are suffering but I guess that as a community we are going as safely and fast as we can. -`r blogdown::shortcode("tweet", "1024044326664527875")` +`r blogdown::shortcode("tweet", user="FertigLab", id="1024044326664527875")` I'm not supporting whoever Michael was referencing in his next tweet. I don't flirt at conferences: I do socialize and try to make new friends with fellow conference attendees. I do acknowledge that I struggle in my head with what is ok and not ok to do, particularly with people you spend at lot of time with at school, work, etc. I'm not certain of the boundary between clumsy dating skills and sexual misconduct in some scenarios. I think that I'm not the only one because I've heard different versions in different sexual harassment prevention sessions. So mostly I end up doing nothing yet sometimes I wonder if I lost out because I didn't try a bit more with X person. For instance, Mercedes maried her classmate Rolando. What can I say, I'm still learning and we all probably need to learn to differentiate these boundaries better through more training. -`r blogdown::shortcode("tweet", "1024066415752433664")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="1024066415752433664")` I also know that sometimes I've been a bystander and failed to take action. So this next idea sounds good to me. I do try to intervene more now, specially with micro aggressions: because they are less high pressure situations and easier to do something about, at least that's how I feel. -`r blogdown::shortcode("tweet", "1024063008987787264")` +`r blogdown::shortcode("tweet", user="1024063008987787264", id="1024063008987787264")` To close my post, I encourage you to check their request for feedback! -`r blogdown::shortcode("tweet", "1023977618104889346")` +`r blogdown::shortcode("tweet", user="KLdivergence", id="1023977618104889346")` And if you are an R non-cis male person, you should totally join the R-Ladies community slack! -`r blogdown::shortcode("tweet", "1022031250759053314")` +`r blogdown::shortcode("tweet", user="RLadiesGlobal", id="1022031250759053314")` diff --git a/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.html b/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.html index 871119f..7472146 100644 --- a/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.html +++ b/content/post/2018-07-30-harrassment-diversity-in-science-and-inspiraton-from-my-grandmother.html @@ -21,7 +21,7 @@CDSBMexico
This was a very important day for me. It was the beginning of the Latin American R/BioConductor Developers Workshop 2018 in Cuernavaca, Mexico. I already wrote a blog post about why I was super excited about CDSBMexico, but briefly it’s because this is something we’ve been wanting to see become a reality for years and have been working towards it.
-{{% tweet "1023665229882961922" %}} +{{% tweet user="lcolladotor" id="1023665229882961922" %}}My job was to give the first keynote to pump up everyone at the workshop. So I had a bit of trouble sleeping and woke up remembering a dream. If you know me, I never dream: or never remember my dreams. It was a dream of my grandmother Mercedes Vides Tovar.
Grandma
I did inherit her souvenirs from her trips (my dad also loves them) and something that is precious to me: a medal with her name. I’ve looked at that medal next to my bed in Mexico many times. I would look at it, search for inspiration, then try harder to solve whatever academic problem I had.
In my dream there was a moment where I was sitting next to her (me in my current adult form) and we were revising many of our shared moments. She was explaining to me things she couldn’t explain before because I wouldn’t have understood them. She also pumped me up before my day and wished me luck for my talk. I think that I delivered ^^
-{{% tweet "1023953817187090435" %}} +{{% tweet user="semiramis_cj" id="1023953817187090435" %}}WomenInStem
Today was a big day for WomenInSTEM and in particular in the field of Statistics. Why? Today the Joint Statistical Meetings (JSM2018) held a session on “Addressing Sexual Misconduct in Statistics” that was organized by Stephanie Hicks and chaired by Keegan Korthauer.
-{{% tweet "1004467110918213637" %}} +{{% tweet user="stephaniehicks" id="1004467110918213637" %}}The session is not a direct response (I think) but it’s definitely related to Kristian Lum’s blog post titled Statistics, we have a problem and to the more general MeToo movement.
Sexual harassment and misconduct not a US problem only. We have a code of conduct at CDSBMexico both in English and Spanish to help prevent any issues.
-{{% tweet "1024060403138142209" %}} +{{% tweet user="michaelhoffman" id="1024060403138142209" %}}I couldn’t be there, but I wasn’t the only one excited following what has happening online thanks to tweets from many including Mandy Mejia and Michael Hoffman.
-{{% tweet "1024042337033285632" %}} +{{% tweet user="mandyfmejia" id="1024042337033285632" %}}Times are changing
I do think that slowly, maybe sometimes quickly, the times are changing. I’ve been telling friends and family for a few years now that I’ve come to realize that we need to keep trying to improve, to stay updated, to do what’s best and maybe sometimes come up with new ideas to improve things. I do care quite a bit for WomenInSTEM but for me, it’s larger than that. It’s about diversity. I don’t know in how many different ways we can label each other and it’s not the point. So yes, gender diversity is a good thing and initiatives like this seem like a good thing to do:
-{{% tweet "1024068383564853248" %}} +{{% tweet user="lcolladotor" id="1024068383564853248" %}}But then I think immediately of next steps, like race and ethnicity as well as sexual diversity. I want to ask for more, but I sometimes hold myself back. I’m no expert on many of these topics, so maybe what seems like a good policy could easily backfire later. So I think about incremental steps. But maybe that’s too slow and not enough. Maybe careers are suffering but I guess that as a community we are going as safely and fast as we can.
-{{% tweet "1024044326664527875" %}} +{{% tweet user="FertigLab" id="1024044326664527875" %}}I’m not supporting whoever Michael was referencing in his next tweet. I don’t flirt at conferences: I do socialize and try to make new friends with fellow conference attendees. I do acknowledge that I struggle in my head with what is ok and not ok to do, particularly with people you spend at lot of time with at school, work, etc. I’m not certain of the boundary between clumsy dating skills and sexual misconduct in some scenarios. I think that I’m not the only one because I’ve heard different versions in different sexual harassment prevention sessions. So mostly I end up doing nothing yet sometimes I wonder if I lost out because I didn’t try a bit more with X person. For instance, Mercedes maried her classmate Rolando. What can I say, I’m still learning and we all probably need to learn to differentiate these boundaries better through more training.
-{{% tweet "1024066415752433664" %}} +{{% tweet user="michaelhoffman" id="1024066415752433664" %}}I also know that sometimes I’ve been a bystander and failed to take action. So this next idea sounds good to me. I do try to intervene more now, specially with micro aggressions: because they are less high pressure situations and easier to do something about, at least that’s how I feel.
-{{% tweet "1024063008987787264" %}} +{{% tweet user="1024063008987787264" id="1024063008987787264" %}}To close my post, I encourage you to check their request for feedback!
-{{% tweet "1023977618104889346" %}} +{{% tweet user="KLdivergence" id="1023977618104889346" %}}And if you are an R non-cis male person, you should totally join the R-Ladies community slack!
-{{% tweet "1022031250759053314" %}} +{{% tweet user="RLadiesGlobal" id="1022031250759053314" %}}Acknowledgments
diff --git a/content/post/2018-09-13-r-gene-regulatory-interaction-formulator-for-inquiring-networks.html b/content/post/2018-09-13-r-gene-regulatory-interaction-formulator-for-inquiring-networks.html index 26ffe59..86e2cee 100644 --- a/content/post/2018-09-13-r-gene-regulatory-interaction-formulator-for-inquiring-networks.html +++ b/content/post/2018-09-13-r-gene-regulatory-interaction-formulator-for-inquiring-networks.html @@ -129,7 +129,7 @@History
Acknowledgments
Here you can find the tweet about the original blog post:
-{{% tweet "1031904001833414659" %}} +{{% tweet user="CDSBMexico" id="1031904001833414659" %}}This blog post was made possible thanks to:
- blogdown (Xie, Hill, and Thomas, 2017) diff --git a/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.Rmd b/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.Rmd index 2d16c89..65ab82f 100644 --- a/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.Rmd +++ b/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.Rmd @@ -142,7 +142,7 @@ As you can see, this is just an idea, or a collection of them around one theme. Do you want to listen to the whole panel discussion? From this tweet it looks like the recording will be available online: -`r blogdown::shortcode("tweet", "1041732455865171972")` +`r blogdown::shortcode("tweet", user="JohnsHopkinsSPH", id="1041732455865171972")` This blog post was made possible thanks to: diff --git a/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.html b/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.html index 01f795d..d476447 100644 --- a/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.html +++ b/content/post/2018-09-17-what-about-a-lawyer-like-app-as-the-mininum-help-for-defandants-in-immigration-cases.html @@ -107,7 +107,7 @@
- BiocStyle (Oleś, Morgan, and Huber, 2020) diff --git a/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.Rmd b/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.Rmd index 6a20223..312bd02 100644 --- a/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.Rmd +++ b/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.Rmd @@ -38,7 +38,7 @@ bib <- c( A few days ago a friend of mine told me that I was on the list of newly admitted SNI members. A few have asked me since why did I request to join it. So here's my public reply. -`r blogdown::shortcode("tweet", "1045051193146396674")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1045051193146396674")` ### SNI @@ -78,18 +78,18 @@ But back to protection and security. My father has taught me that it's our respo This attitude goes beyond SNI. That is why I compete when I can for awards and scholarships that I think fit me, even if its a long shot. No one will come to you and say, "hey, your work is great, now you are a SNI member" (or any award). I believe that you have to keep working and make it hard for others to say no to your applications. You have to keep trying though because you won't get them all. That was one of my messages in my recent CDSBMexico keynote. -`r blogdown::shortcode("tweet", "1023665229882961922")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1023665229882961922")` Here are some of my recent applications: -`r blogdown::shortcode("tweet", "1009559232931401730")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1009559232931401730")` -`r blogdown::shortcode("tweet", "960590896310968320")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="960590896310968320")` -`r blogdown::shortcode("tweet", "1032287739176267776")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1032287739176267776")` -`r blogdown::shortcode("tweet", "1045763904964612096")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1045763904964612096")` So what happens now? I updated my CV as a friend suggested to list that I'm a SNI National Researcher Level 1. @@ -100,7 +100,7 @@ So what happens now? I updated my CV as a friend suggested to list that I'm a SN I want to thank my friends that helped me during the SNI application process! -`r blogdown::shortcode("tweet", "1045053659967639555")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1045053659967639555")` This blog post was made possible thanks to: diff --git a/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.html b/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.html index 451a85d..3a1e064 100644 --- a/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.html +++ b/content/post/2018-09-29-why-i-applied-to-join-sni-the-mexican-national-researchers-registry.html @@ -18,7 +18,7 @@
- BiocStyle (Oleś, Morgan, and Huber, 2020) diff --git a/content/post/2018-10-16-ashg18-tweet-summary.Rmd b/content/post/2018-10-16-ashg18-tweet-summary.Rmd index 832c41c..5f77f00 100644 --- a/content/post/2018-10-16-ashg18-tweet-summary.Rmd +++ b/content/post/2018-10-16-ashg18-tweet-summary.Rmd @@ -40,37 +40,37 @@ The linked tweets are frequently from [Eli Robertson](https://twitter.com/thatdn So, without further ado, here we go: -`r blogdown::shortcode("tweet", "1052045759019773954")` +`r blogdown::shortcode("tweet", user="skathire", id="")` ### Award presentations -`r blogdown::shortcode("tweet", "1052353598934245376")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` Sek also thanked all his mentees ^^. -`r blogdown::shortcode("tweet", "1052357277318111232")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` -`r blogdown::shortcode("tweet", "1052360103381221376")` +`r blogdown::shortcode("tweet", user="MariaChahrour", id="")` ### Diversity -`r blogdown::shortcode("tweet", "1051517538067197957")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1052210653950345217")` +`r blogdown::shortcode("tweet", user="princyparsana", id="")` -`r blogdown::shortcode("tweet", "1052340441377435648")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052345071062798336")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052356640651898881")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` ### Mitchel Cole SNP crispr-cas9 perturbation study in blood cells. -`r blogdown::shortcode("tweet", "1052359394439106560")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` -`r blogdown::shortcode("tweet", "1052360756610519040")` +`r blogdown::shortcode("tweet", user="aidanbutty", id="")` MC mentioned metaFDR for combining pvalues from 4 tests. @@ -79,75 +79,75 @@ MC mentioned metaFDR for combining pvalues from 4 tests. Uniparental disomy using 23andMe data. Seeking prevalence information in general population. -`r blogdown::shortcode("tweet", "1052364953984876544")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` -`r blogdown::shortcode("tweet", "1052365691565760512")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` 3 types that can be identified by 2 in silico methods. -`r blogdown::shortcode("tweet", "1052366223487381504")` +`r blogdown::shortcode("tweet", user="CharlestonCWKC", id="")` -`r blogdown::shortcode("tweet", "1052366741118976001")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1052367633738166273")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1052368774257618945")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` Mentioned PheWAS. PN: Don't know if you can get single cell data from 23andMe customers. -`r blogdown::shortcode("tweet", "1052369350802300934")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1052370107651915777")` +`r blogdown::shortcode("tweet", user="beryl_bbc", id="")` -`r blogdown::shortcode("tweet", "1052371085675528193")` +`r blogdown::shortcode("tweet", user="s_ramach", id="")` ### Jack A Kosmicki -`r blogdown::shortcode("tweet", "1052370135304949763")` +`r blogdown::shortcode("tweet", user="beryl_bbc", id="")` -`r blogdown::shortcode("tweet", "1052370234030649344")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` mentioned pLl method -`r blogdown::shortcode("tweet", "1052371239644196865")` +`r blogdown::shortcode("tweet", user="DrGeneUK", id="")` -`r blogdown::shortcode("tweet", "1052371262071169024")` +`r blogdown::shortcode("tweet", user="Single_Molecule", id="")` -`r blogdown::shortcode("tweet", "1052371493647147009")` +`r blogdown::shortcode("tweet", user="ksamocha", id="")` 99 ASD genes -`r blogdown::shortcode("tweet", "1052371900926554112")` +`r blogdown::shortcode("tweet", user="beryl_bbc", id="")` -`r blogdown::shortcode("tweet", "1052372607029264384")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` summary -`r blogdown::shortcode("tweet", "1052373073402294272")` +`r blogdown::shortcode("tweet", user="StatGenDan", id="")` -`r blogdown::shortcode("tweet", "1052373218932199424")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` ### Caitlin Bowen -`r blogdown::shortcode("tweet", "1052375530656464896")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` Sorry, I left this talk early to see the poster talks (that I didn't know had been delayed). ### Wrap up -`r blogdown::shortcode("tweet", "1052380042481807360")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` ### Poster talks -`r blogdown::shortcode("tweet", "1052382540550557696")` +`r blogdown::shortcode("tweet", user="Genomes2People", id="")` Single cell composition and organs poster 2012 seemed interesting to me. I added to my calendar! @@ -164,7 +164,7 @@ This blog post was made possible thanks to: as well as everyone who was tweeting! See you on Thursday! -`r blogdown::shortcode("tweet", "1051524651950718977")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` ### References diff --git a/content/post/2018-10-16-ashg18-tweet-summary.html b/content/post/2018-10-16-ashg18-tweet-summary.html index e604ce4..42367d1 100644 --- a/content/post/2018-10-16-ashg18-tweet-summary.html +++ b/content/post/2018-10-16-ashg18-tweet-summary.html @@ -18,72 +18,72 @@
- sessioninfo (Csárdi, core, Wickham, Chang, et al., 2018)
- sessioninfo (Csárdi, core, Wickham, Chang, et al., 2018)
- Looked at enhancers too.
- Question from the audience about the differential shapes of the peaks between cases and controls. @@ -94,77 +94,77 @@
- sessioninfo (Csárdi, core, Wickham, Chang, et al., 2018)
- BiocStyle (Oleś, Morgan, and Huber, 2020) diff --git a/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.Rmd b/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.Rmd index 3c71a21..06256df 100644 --- a/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.Rmd +++ b/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.Rmd @@ -40,7 +40,7 @@ bib <- c( _This blog post was first published at the [CDSBMexico website](https://comunidadbioinfo.github.io/post/cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships/)._ -`r blogdown::shortcode('tweet', '1101339389395943424')` +`r blogdown::shortcode('tweet', user='CDSBMexico', id='1101339389395943424')` About 10 months ago [we announced our plans](http://lcolladotor.github.io/2018/04/19/latin-american-r-bioconductor-developers-workshop-2018/#.XHiaE1NKg0o) to start a new community of R/Bioconductor developers in Mexico and Latin America. The National Bioinformatics Node ([NNB-UNAM](http://www.nnb.unam.mx/) in Spanish) [has organized workshops](http://congresos.nnb.unam.mx/) in bioinformatics and R since 2006 and more frequently since 2010. Last year, 2018, there were [five simultaneous one week workshops](http://congresos.nnb.unam.mx/TIB2018/): diff --git a/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.html b/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.html index 9954800..c48182b 100644 --- a/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.html +++ b/content/post/2019-02-28-cdsbmexico-remember-to-apply-for-bioc2019-travel-scholarships.html @@ -19,7 +19,7 @@
- Introduction to R and RStudio diff --git a/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.Rmd b/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.Rmd index 37f8ebd..c3f598d 100644 --- a/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.Rmd +++ b/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.Rmd @@ -41,7 +41,7 @@ bib <- c( The [`hugo-academic`](https://github.com/gcushen/hugo-academic) theme which powers my website is active and frequently updated. I don't update my website that frequently anymore, but I recently found about many of their changes when I made the [CDSB website](https://comunidadbioinfo.github.io/). -`r blogdown::shortcode('tweet', '1114003433755959296')` +`r blogdown::shortcode('tweet', user='CDSBMexico', id='1114003433755959296')` One of the new features that I liked quite a bit was the ability to have landing pages for each person in your team. I wanted to improve my website's section [describing the people I've mentored](http://lcolladotor.github.io/#mentoring) so I decided to update my personal website too. Once I started this process, I realized that talks and publications had drastically changed. You could now have an image per talk or publication, add tags to them and link them to projects. Furthermore, I noticed that I hadn't uploaded all my posters nor the slides for all my talks. So this whole process of updating my website took quite a bit of time! All this new information is also reflected on my [CV](http://lcolladotor.github.io/#cv) now. diff --git a/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.html b/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.html index 1f7f2d0..ef36fcc 100644 --- a/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.html +++ b/content/post/2019-04-10-the-evolution-of-my-academic-career-as-seen-through-posters-and-talks-thanks-to-hugo-academic-4-1.html @@ -19,7 +19,7 @@
- SummarizedExperiment (Morgan, Obenchain, Hester, and Pagès, 2019)
Doing some convincing
Acknowledgments
Do you want to listen to the whole panel discussion? From this tweet it looks like the recording will be available online:
-{{% tweet "1041732455865171972" %}} +{{% tweet user="JohnsHopkinsSPH" id="1041732455865171972" %}}This blog post was made possible thanks to:
A few days ago a friend of mine told me that I was on the list of newly admitted SNI members. A few have asked me since why did I request to join it. So here’s my public reply.
-{{% tweet "1045051193146396674" %}} +{{% tweet user="lcolladotor" id="1045051193146396674" %}}SNI
First let me tell you what SNI is. It stands for Sistema Nacional de Investigadores which translates to National Researchers Registry. It’s a way that the Mexican government created in 1984 to recognize high quality researchers and encourage them to continue to do great research, teach the next generation of researchers and promote innovation (Wikipedia). There are three types of members:
@@ -48,18 +48,18 @@So why did I apply to join SNI?
Beyond SNI
This attitude goes beyond SNI. That is why I compete when I can for awards and scholarships that I think fit me, even if its a long shot. No one will come to you and say, “hey, your work is great, now you are a SNI member” (or any award). I believe that you have to keep working and make it hard for others to say no to your applications. You have to keep trying though because you won’t get them all. That was one of my messages in my recent CDSBMexico keynote.
-{{% tweet "1023665229882961922" %}} +{{% tweet user="lcolladotor" id="1023665229882961922" %}}Here are some of my recent applications:
-{{% tweet "1009559232931401730" %}} -{{% tweet "960590896310968320" %}} -{{% tweet "1032287739176267776" %}} -{{% tweet "1045763904964612096" %}} +{{% tweet user="lcolladotor" id="1009559232931401730" %}} +{{% tweet user="lcolladotor" id="960590896310968320" %}} +{{% tweet user="lcolladotor" id="1032287739176267776" %}} +{{% tweet user="lcolladotor" id="1045763904964612096" %}}So what happens now? I updated my CV as a friend suggested to list that I’m a SNI National Researcher Level 1.
Acknowledgments
I want to thank my friends that helped me during the SNI application process!
-{{% tweet "1045053659967639555" %}} +{{% tweet user="lcolladotor" id="1045053659967639555" %}}This blog post was made possible thanks to:
Today was the first day of the American Society of Human Genetics (ASHG) 2018 conference. The official hashtag for the conference is ASHG18 on Twitter. At first I was tweeting myself and checking both the top and the latest tweets. As the day progressed I started a Google Doc to take notes during talks. I was missing some details so I was relying on the latest tweets and copy-pasting the tweet links to my notes. At some point I told myself I should simply turn this collection of tweet links into a simple blog post. So here it is for day 1. You can consider it a curated list of the ASHG18 tweets. Although it’s incomplete because it only covers the talks I went to starting from the Presidential address.
The linked tweets are frequently from Eli Robertson1 and Michael Hoffmann2, but also from other Twitter users3.
So, without further ado, here we go:
-{{% tweet "1052045759019773954" %}} +{{% tweet user="skathire" id="1052045759019773954" %}}Award presentations
-{{% tweet "1052353598934245376" %}} +{{% tweet user="michaelhoffman" id="1052353598934245376" %}}Sek also thanked all his mentees ^^.
-{{% tweet "1052357277318111232" %}} -{{% tweet "1052360103381221376" %}} +{{% tweet user="thatdnaguy" id="1052357277318111232" %}} +{{% tweet user="MariaChahrour" id="1052360103381221376" %}}Diversity
-{{% tweet "1051517538067197957" %}} -{{% tweet "1052210653950345217" %}} -{{% tweet "1052340441377435648" %}} -{{% tweet "1052345071062798336" %}} -{{% tweet "1052356640651898881" %}} +{{% tweet user="michaelhoffman" id="1051517538067197957" %}} +{{% tweet user="princyparsana" id="1052210653950345217" %}} +{{% tweet user="lcolladotor" id="1052340441377435648" %}} +{{% tweet user="lcolladotor" id="1052345071062798336" %}} +{{% tweet user="lcolladotor" id="1052356640651898881" %}}Mitchel Cole
SNP crispr-cas9 perturbation study in blood cells.
-{{% tweet "1052359394439106560" %}} -{{% tweet "1052360756610519040" %}} +{{% tweet user="thatdnaguy" id="1052359394439106560" %}} +{{% tweet user="aidanbutty" id="1052360756610519040" %}}MC mentioned metaFDR for combining pvalues from 4 tests.
Priyanka Nakka
Uniparental disomy using 23andMe data. Seeking prevalence information in general population.
-{{% tweet "1052364953984876544" %}} -{{% tweet "1052365691565760512" %}} +{{% tweet user="thatdnaguy" id="1052364953984876544" %}} +{{% tweet user="michaelhoffman" id="1052365691565760512" %}}3 types that can be identified by 2 in silico methods.
-{{% tweet "1052366223487381504" %}} -{{% tweet "1052366741118976001" %}} -{{% tweet "1052367633738166273" %}} -{{% tweet "1052368774257618945" %}} +{{% tweet user="CharlestonCWKC" id="1052366223487381504" %}} +{{% tweet user="23andMeResearch" id="1052366741118976001" %}} +{{% tweet user="23andMeResearch" id="1052367633738166273" %}} +{{% tweet user="thatdnaguy" id="1052368774257618945" %}}Mentioned PheWAS.
PN: Don’t know if you can get single cell data from 23andMe customers.
-{{% tweet "1052369350802300934" %}} -{{% tweet "1052370107651915777" %}} -{{% tweet "1052371085675528193" %}} +{{% tweet user="23andMeResearch" id="1052369350802300934" %}} +{{% tweet user="beryl_bbc" id="1052370107651915777" %}} +{{% tweet user="s_ramach" id="1052371085675528193" %}}Jack A Kosmicki
-{{% tweet "1052370135304949763" %}} -{{% tweet "1052370234030649344" %}} +{{% tweet user="beryl_bbc" id="1052370135304949763" %}} +{{% tweet user="thatdnaguy" id="1052370234030649344" %}}mentioned pLl method
-{{% tweet "1052371239644196865" %}} -{{% tweet "1052371262071169024" %}} -{{% tweet "1052371493647147009" %}} +{{% tweet user="DrGeneUK" id="1052371239644196865" %}} +{{% tweet user="Single_Molecule" id="1052371262071169024" %}} +{{% tweet user="ksamocha" id="1052371493647147009" %}}99 ASD genes
-{{% tweet "1052371900926554112" %}} -{{% tweet "1052372607029264384" %}} +{{% tweet user="beryl_bbc" id="1052371900926554112" %}} +{{% tweet user="michaelhoffman" id="1052372607029264384" %}}summary
-{{% tweet "1052373073402294272" %}} -{{% tweet "1052373218932199424" %}} +{{% tweet user="StatGenDan" id="1052373073402294272" %}} +{{% tweet user="thatdnaguy" id="1052373218932199424" %}}Caitlin Bowen
-{{% tweet "1052375530656464896" %}} +{{% tweet user="thatdnaguy" id="1052375530656464896" %}}Sorry, I left this talk early to see the poster talks (that I didn’t know had been delayed).
Wrap up
-{{% tweet "1052380042481807360" %}} +{{% tweet user="thatdnaguy" id="1052380042481807360" %}}Poster talks
-{{% tweet "1052382540550557696" %}} +{{% tweet user="Genomes2People" id="1052382540550557696" %}}Single cell composition and organs poster 2012 seemed interesting to me. I added to my calendar!
@@ -96,7 +96,7 @@
Acknowledgments
as well as everyone who was tweeting! See you on Thursday!
-{{% tweet "1051524651950718977" %}} +{{% tweet user="michaelhoffman" id="1051524651950718977" %}}References
diff --git a/content/post/2018-10-17-ashg18-tweet-summary-day-2.Rmd b/content/post/2018-10-17-ashg18-tweet-summary-day-2.Rmd index af8d6e4..a110660 100644 --- a/content/post/2018-10-17-ashg18-tweet-summary-day-2.Rmd +++ b/content/post/2018-10-17-ashg18-tweet-summary-day-2.Rmd @@ -38,54 +38,54 @@ bib <- c( Continuing from my [ASHG18 day 1 post](http://lcolladotor.github.io/2018/10/16/ashg18-tweet-summary-day-1/#.W8gWEBNKg0o), here's my list of tweets from day 2. Note that I changed sessions a few times. -`r blogdown::shortcode("tweet", "1052618815274700802")` +`r blogdown::shortcode("tweet", user="JulieNadel", id="")` -`r blogdown::shortcode("tweet", "1052622201533358080")` +`r blogdown::shortcode("tweet", user="dccc_phd", id="")` ### 6E 10:30 am -`r blogdown::shortcode("tweet", "1052077112931172352")` +`r blogdown::shortcode("tweet", user="NanibaaGarrison", id="")` #### Nanibaa’ Garrison -`r blogdown::shortcode("tweet", "1052615800480129025")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` #### Maile Taualii “Nobody wakes up thinking how can I harm indigenous populations!” -`r blogdown::shortcode("tweet", "1052616982535667712")` +`r blogdown::shortcode("tweet", user="Brooke_LaFlamme", id="")` -`r blogdown::shortcode("tweet", "1052617666555338754")` +`r blogdown::shortcode("tweet", user="NanibaaGarrison", id="")` -`r blogdown::shortcode("tweet", "1052617774818713601")` +`r blogdown::shortcode("tweet", user="KeoluFox", id="")` -`r blogdown::shortcode("tweet", "1052618174028378112")` +`r blogdown::shortcode("tweet", user="Brooke_LaFlamme", id="")` #### Nadine Caron -`r blogdown::shortcode("tweet", "1052618270384185345")` +`r blogdown::shortcode("tweet", user="CharlestonCWKC", id="")` -`r blogdown::shortcode("tweet", "1052618572575453185")` +`r blogdown::shortcode("tweet", user="johnhawks", id="")` -`r blogdown::shortcode("tweet", "1052621619712090112")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052622727578865665")` +`r blogdown::shortcode("tweet", user="paleogenomics", id="")` -`r blogdown::shortcode("tweet", "1052621558194221056")` +`r blogdown::shortcode("tweet", user="popgenepi", id="")` #### Ngiare Brown -`r blogdown::shortcode("tweet", "1052622923918274565")` +`r blogdown::shortcode("tweet", user="ElenaSorokin", id="")` -`r blogdown::shortcode("tweet", "1052623035084099587")` +`r blogdown::shortcode("tweet", user="riley_ilyse", id="")` -`r blogdown::shortcode("tweet", "1052624418856361984")` +`r blogdown::shortcode("tweet", user="NanibaaGarrison", id="")` Third time she mentioned “sexy research”. I thought that this term was frowned upon, maybe it's not. @@ -93,16 +93,16 @@ Third time she mentioned “sexy research”. I thought that this term was frown He made us laugh with his conflict of interest slide. No commercial interests. Just interest in indigenous genomics and helping others. -`r blogdown::shortcode("tweet", "1052625563813339136")` +`r blogdown::shortcode("tweet", user="johnhawks", id="")` Issue with open data. They want to control how the data is re-used. Like for imputation: what are they looking at? Is it something they agree? -`r blogdown::shortcode("tweet", "1052626680546758656")` +`r blogdown::shortcode("tweet", user="johnhawks", id="")` -`r blogdown::shortcode("tweet", "1052633878421274624")` +`r blogdown::shortcode("tweet", user="johnhawks", id="")` -`r blogdown::shortcode("tweet", "1052634541083512833")` +`r blogdown::shortcode("tweet", user="johnhawks", id="")` @@ -111,27 +111,27 @@ Issue with open data. They want to control how the data is re-used. Like for imp #### Kelly East -`r blogdown::shortcode("tweet", "1052628766739054592")` +`r blogdown::shortcode("tweet", user="girlscientist", id="")` -`r blogdown::shortcode("tweet", "1052628958330552320")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1052630261052002304")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` (others made better tweets!) -`r blogdown::shortcode("tweet", "1052630028364599296")` +`r blogdown::shortcode("tweet", user="girlscientist", id="")` -`r blogdown::shortcode("tweet", "1052630250918567937")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1052631513332834304")` +`r blogdown::shortcode("tweet", user="sgpombe", id="")` -`r blogdown::shortcode("tweet", "1052631235770572800")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1052631310290669568")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052632738287706112")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052633474354405377")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` I guess that it’s for US scientists, but I don't think of the "Deep South" in the US when I hear "SouthSeq". Anyway, SouthSeq looks like a great project with many ways to train others in genetics. @@ -140,60 +140,60 @@ I guess that it’s for US scientists, but I don't think of the "Deep South" in #### Chris Gunter -`r blogdown::shortcode("tweet", "1052636166804013056")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` 35,000 page views on DNA awareness day3. 23andMe did a survey study in March 2018 -`r blogdown::shortcode("tweet", "1052636686025256960")` +`r blogdown::shortcode("tweet", user="MoleculeMind", id="")` -`r blogdown::shortcode("tweet", "1052638967663800320")` +`r blogdown::shortcode("tweet", user="CincyKidsGenomX", id="")` -`r blogdown::shortcode("tweet", "1052639236086616065")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1052640088360796161")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052641512524111872")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052641926833291264")` +`r blogdown::shortcode("tweet", user="yhtacgnol", id="")` -`r blogdown::shortcode("tweet", "1052643639267012613")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052620297155829760")` +`r blogdown::shortcode("tweet", user="girlscientist", id="")` ### Other (morning) -`r blogdown::shortcode("tweet", "1052622463060701187")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1052634348610977792")` +`r blogdown::shortcode("tweet", user="introspection", id="")` ### 20BC 4:15 pm (4:23) #### Semanti Mukherjee -`r blogdown::shortcode("tweet", "1052701901886636032")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1052701298502459392")` +`r blogdown::shortcode("tweet", user="Single_Molecule", id="")` -`r blogdown::shortcode("tweet", "1052702644764987392")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` #### Chimene Kesserwan: -`r blogdown::shortcode("tweet", "1052704646773370880")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` #### Cynthia Zepeda -`r blogdown::shortcode("tweet", "1052708167715414018")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` -`r blogdown::shortcode("tweet", "1052709637521166336")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` #### Xiaowu Gai -`r blogdown::shortcode("tweet", "1052712645944532992")` +`r blogdown::shortcode("tweet", user="Single_Molecule", id="")` He thanked others for uploading data and making it publicly available so bioinformaticians like him can download it and re-analyze it. I totally agree with him! @@ -211,62 +211,62 @@ PI Panos Roussos. Single cell data. ### Other (afternoon) -`r blogdown::shortcode("tweet", "1052717804678303744")` +`r blogdown::shortcode("tweet", user="GenomeNathan", id="")` ### 20 BC 6 pm #### Christopher Lau -`r blogdown::shortcode("tweet", "1052726969597538304")` +`r blogdown::shortcode("tweet", user="UDNconnect", id="")` -`r blogdown::shortcode("tweet", "1052729599803547648")` +`r blogdown::shortcode("tweet", user="lizworthey", id="")` #### Matt Velinder -`r blogdown::shortcode("tweet", "1052732184937656321")` +`r blogdown::shortcode("tweet", user="lizworthey", id="")` -`r blogdown::shortcode("tweet", "1052732625134149632")` +`r blogdown::shortcode("tweet", user="lizworthey", id="")` -`r blogdown::shortcode("tweet", "1052734223746908160")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` ### 20 A 6:42 pm #### Ira Hall -`r blogdown::shortcode("tweet", "1052736415744716800")` +`r blogdown::shortcode("tweet", user="ryanlayer", id="")` Controlling for a nearby pLI gene? I’ve seen pLI mentioned a few times. Gotta read more about it! ### Sarcasm/fun -`r blogdown::shortcode("tweet", "1052625791853293569")` +`r blogdown::shortcode("tweet", user="BiochemG_thall", id="")` -`r blogdown::shortcode("tweet", "1052640703333859328")` +`r blogdown::shortcode("tweet", user="ChloeReuterCGC", id="")` -`r blogdown::shortcode("tweet", "1052701624395649024")` +`r blogdown::shortcode("tweet", user="apicoplast", id="")` -`r blogdown::shortcode("tweet", "1052711607170621440")` +`r blogdown::shortcode("tweet", user="GenomeBiology", id="")` -`r blogdown::shortcode("tweet", "1052713384221716480")` +`r blogdown::shortcode("tweet", user="joyceykao", id="")` plus they have a 50% off discount -`r blogdown::shortcode("tweet", "1052715424859602944")` +`r blogdown::shortcode("tweet", user="apicoplast", id="")` -`r blogdown::shortcode("tweet", "1052727741668159488")` +`r blogdown::shortcode("tweet", user="genome_sheriff", id="")` ### Diversity -`r blogdown::shortcode("tweet", "1052716627689500672")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1052717401429532672")` +`r blogdown::shortcode("tweet", user="NatalieTelis", id="")` -`r blogdown::shortcode("tweet", "1052720229715914753")` +`r blogdown::shortcode("tweet", user="lizworthey", id="")` ### Motivational -`r blogdown::shortcode("tweet", "1052629878569234432")` +`r blogdown::shortcode("tweet", user="skerfoot", id="")` ### Acknowledgments @@ -280,7 +280,7 @@ This blog post was made possible thanks to: and everyone who wrote tweets with the [ASHG18](https://twitter.com/search?q=%23ASHG18) hashtag! -`r blogdown::shortcode("tweet", "1051524651950718977")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` ### References diff --git a/content/post/2018-10-17-ashg18-tweet-summary-day-2.html b/content/post/2018-10-17-ashg18-tweet-summary-day-2.html index 7a88589..dea569b 100644 --- a/content/post/2018-10-17-ashg18-tweet-summary-day-2.html +++ b/content/post/2018-10-17-ashg18-tweet-summary-day-2.html @@ -16,105 +16,105 @@Continuing from my ASHG18 day 1 post, here’s my list of tweets from day 2. Note that I changed sessions a few times.
-{{% tweet "1052618815274700802" %}} -{{% tweet "1052622201533358080" %}} +{{% tweet user="JulieNadel" id="1052618815274700802" %}} +{{% tweet user="dccc_phd" id="1052622201533358080" %}}6E 10:30 am
-{{% tweet "1052077112931172352" %}} +{{% tweet user="NanibaaGarrison" id="1052077112931172352" %}}Nanibaa’ Garrison
-{{% tweet "1052615800480129025" %}} +{{% tweet user="lcolladotor" id="1052615800480129025" %}}Maile Taualii
“Nobody wakes up thinking how can I harm indigenous populations!”
-{{% tweet "1052616982535667712" %}} -{{% tweet "1052617666555338754" %}} -{{% tweet "1052617774818713601" %}} -{{% tweet "1052618174028378112" %}} +{{% tweet user="Brooke_LaFlamme" id="1052616982535667712" %}} +{{% tweet user="NanibaaGarrison" id="1052617666555338754" %}} +{{% tweet user="KeoluFox" id="1052617774818713601" %}} +{{% tweet user="Brooke_LaFlamme" id="1052618174028378112" %}}Nadine Caron
-{{% tweet "1052618270384185345" %}} -{{% tweet "1052618572575453185" %}} -{{% tweet "1052621619712090112" %}} -{{% tweet "1052622727578865665" %}} -{{% tweet "1052621558194221056" %}} +{{% tweet user="CharlestonCWKC" id="1052618270384185345" %}} +{{% tweet user="johnhawks" id="1052618572575453185" %}} +{{% tweet user="lcolladotor" id="1052621619712090112" %}} +{{% tweet user="paleogenomics" id="1052622727578865665" %}} +{{% tweet user="popgenepi" id="1052621558194221056" %}}Ngiare Brown
-{{% tweet "1052622923918274565" %}} -{{% tweet "1052623035084099587" %}} -{{% tweet "1052624418856361984" %}} +{{% tweet user="ElenaSorokin" id="1052622923918274565" %}} +{{% tweet user="riley_ilyse" id="1052623035084099587" %}} +{{% tweet user="NanibaaGarrison" id="1052624418856361984" %}}Third time she mentioned “sexy research”. I thought that this term was frowned upon, maybe it’s not.
Maui Hudson
He made us laugh with his conflict of interest slide. No commercial interests. Just interest in indigenous genomics and helping others.
-{{% tweet "1052625563813339136" %}} +{{% tweet user="johnhawks" id="1052625563813339136" %}}Issue with open data. They want to control how the data is re-used. Like for imputation: what are they looking at? Is it something they agree?
-{{% tweet "1052626680546758656" %}} -{{% tweet "1052633878421274624" %}} -{{% tweet "1052634541083512833" %}} +{{% tweet user="johnhawks" id="1052626680546758656" %}} +{{% tweet user="johnhawks" id="1052633878421274624" %}} +{{% tweet user="johnhawks" id="1052634541083512833" %}}6C 11:30 am
Kelly East
-{{% tweet "1052628766739054592" %}} -{{% tweet "1052628958330552320" %}} -{{% tweet "1052630261052002304" %}} +{{% tweet user="girlscientist" id="1052628766739054592" %}} +{{% tweet user="averydavisbell" id="1052628958330552320" %}} +
{{% tweet user="lcolladotor" id="1052630261052002304" %}} (others made better tweets!)
-{{% tweet "1052630028364599296" %}} -{{% tweet "1052630250918567937" %}} -{{% tweet "1052631513332834304" %}} -{{% tweet "1052631235770572800" %}} -{{% tweet "1052631310290669568" %}} -{{% tweet "1052632738287706112" %}} -{{% tweet "1052633474354405377" %}} +{{% tweet user="girlscientist" id="1052630028364599296" %}} +{{% tweet user="averydavisbell" id="1052630250918567937" %}} +{{% tweet user="sgpombe" id="1052631513332834304" %}} +{{% tweet user="averydavisbell" id="1052631235770572800" %}} +{{% tweet user="lcolladotor" id="1052631310290669568" %}} +{{% tweet user="lcolladotor" id="1052632738287706112" %}} +{{% tweet user="lcolladotor" id="1052633474354405377" %}}I guess that it’s for US scientists, but I don’t think of the “Deep South” in the US when I hear “SouthSeq”. Anyway, SouthSeq looks like a great project with many ways to train others in genetics.
“We are not going to run genetic providers out of jobs”. Loved this quote!
Chris Gunter
-{{% tweet "1052636166804013056" %}} +{{% tweet user="averydavisbell" id="1052636166804013056" %}}35,000 page views on DNA awareness day3. 23andMe did a survey study in March 2018
-{{% tweet "1052636686025256960" %}} -{{% tweet "1052638967663800320" %}} -{{% tweet "1052639236086616065" %}} -{{% tweet "1052640088360796161" %}} -{{% tweet "1052641512524111872" %}} -{{% tweet "1052641926833291264" %}} -{{% tweet "1052643639267012613" %}} -{{% tweet "1052620297155829760" %}} +{{% tweet user="MoleculeMind" id="1052636686025256960" %}} +{{% tweet user="CincyKidsGenomX" id="1052638967663800320" %}} +{{% tweet user="averydavisbell" id="1052639236086616065" %}} +{{% tweet user="lcolladotor" id="1052640088360796161" %}} +{{% tweet user="lcolladotor" id="1052641512524111872" %}} +{{% tweet user="yhtacgnol" id="1052641926833291264" %}} +{{% tweet user="lcolladotor" id="1052643639267012613" %}} +{{% tweet user="girlscientist" id="1052620297155829760" %}}Other (morning)
-{{% tweet "1052622463060701187" %}} -{{% tweet "1052634348610977792" %}} +{{% tweet user="michaelhoffman" id="1052622463060701187" %}} +{{% tweet user="introspection" id="1052634348610977792" %}}20BC 4:15 pm (4:23)
Semanti Mukherjee
-{{% tweet "1052701901886636032" %}} -{{% tweet "1052701298502459392" %}} -{{% tweet "1052702644764987392" %}} +{{% tweet user="michaelhoffman" id="1052701901886636032" %}} +{{% tweet user="Single_Molecule" id="1052701298502459392" %}} +{{% tweet user="cgonzagaj" id="1052702644764987392" %}}Chimene Kesserwan:
-{{% tweet "1052704646773370880" %}} +{{% tweet user="michaelhoffman" id="1052704646773370880" %}}Cynthia Zepeda
-{{% tweet "1052708167715414018" %}} -{{% tweet "1052709637521166336" %}} +{{% tweet user="cgonzagaj" id="1052708167715414018" %}} +{{% tweet user="cgonzagaj" id="1052709637521166336" %}}Xiaowu Gai
-{{% tweet "1052712645944532992" %}} +{{% tweet user="Single_Molecule" id="1052712645944532992" %}}He thanked others for uploading data and making it publicly available so bioinformaticians like him can download it and re-analyze it. I totally agree with him!
Yungil Kim
Other (afternoon)
-{{% tweet "1052717804678303744" %}} +{{% tweet user="GenomeNathan" id="1052717804678303744" %}}20 BC 6 pm
Christopher Lau
-{{% tweet "1052726969597538304" %}} -{{% tweet "1052729599803547648" %}} +{{% tweet user="UDNconnect" id="1052726969597538304" %}} +{{% tweet user="lizworthey" id="1052729599803547648" %}}Matt Velinder
-{{% tweet "1052732184937656321" %}} -{{% tweet "1052732625134149632" %}} -{{% tweet "1052734223746908160" %}} +{{% tweet user="lizworthey" id="1052732184937656321" %}} +{{% tweet user="lizworthey" id="1052732625134149632" %}} +{{% tweet user="lcolladotor" id="1052734223746908160" %}}20 A 6:42 pm
Ira Hall
-{{% tweet "1052736415744716800" %}} +{{% tweet user="ryanlayer" id="1052736415744716800" %}}Controlling for a nearby pLI gene? I’ve seen pLI mentioned a few times. Gotta read more about it!
Sarcasm/fun
-{{% tweet "1052625791853293569" %}} -{{% tweet "1052640703333859328" %}} -{{% tweet "1052701624395649024" %}} -{{% tweet "1052711607170621440" %}} -{{% tweet "1052713384221716480" %}} +{{% tweet user="BiochemG_thall" id="1052625791853293569" %}} +{{% tweet user="ChloeReuterCGC" id="1052640703333859328" %}} +{{% tweet user="apicoplast" id="1052701624395649024" %}} +{{% tweet user="GenomeBiology" id="1052711607170621440" %}} +
{{% tweet user="joyceykao" id="1052713384221716480" %}} plus they have a 50% off discount
-{{% tweet "1052715424859602944" %}} -{{% tweet "1052727741668159488" %}} +{{% tweet user="apicoplast" id="1052715424859602944" %}} +{{% tweet user="genome_sheriff" id="1052727741668159488" %}}Diversity
-{{% tweet "1052716627689500672" %}} -{{% tweet "1052717401429532672" %}} -{{% tweet "1052720229715914753" %}} +{{% tweet user="averydavisbell" id="1052716627689500672" %}} +{{% tweet user="NatalieTelis" id="1052717401429532672" %}} +{{% tweet user="lizworthey" id="1052720229715914753" %}}Motivational
-{{% tweet "1052629878569234432" %}} +{{% tweet user="skerfoot" id="1052629878569234432" %}}Acknowledgments
@@ -187,7 +187,7 @@Acknowledgments
and everyone who wrote tweets with the ASHG18 hashtag!
-{{% tweet "1051524651950718977" %}} +{{% tweet user="michaelhoffman" id="1051524651950718977" %}}References
diff --git a/content/post/2018-10-18-ashg18-tweet-summary-day-3.Rmd b/content/post/2018-10-18-ashg18-tweet-summary-day-3.Rmd index 31b7920..95af4dd 100644 --- a/content/post/2018-10-18-ashg18-tweet-summary-day-3.Rmd +++ b/content/post/2018-10-18-ashg18-tweet-summary-day-3.Rmd @@ -41,23 +41,23 @@ Continuing from my [ASHG18 day 1 post](http://lcolladotor.github.io/2018/10/16/a #### Jenna Carlson -`r blogdown::shortcode("tweet", "1052956456578834432")` +`r blogdown::shortcode("tweet", user="CharlestonCWKC", id="")` -`r blogdown::shortcode("tweet", "1052959881756430337")` +`r blogdown::shortcode("tweet", user="StatGenDan", id="")` #### Christopher R. Gignoux -`r blogdown::shortcode("tweet", "1052960113005215744")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1052961594487988224")` +`r blogdown::shortcode("tweet", user="Brooke_LaFlamme", id="")` -`r blogdown::shortcode("tweet", "1052962128749969408")` +`r blogdown::shortcode("tweet", user="CharlestonCWKC", id="")` [www.pagestudy.org](www.pagestudy.org) -`r blogdown::shortcode("tweet", "1052962347810086913")` +`r blogdown::shortcode("tweet", user="ElenaSorokin", id="")` #### Angela Andaleon @@ -70,27 +70,27 @@ Continuing from my [ASHG18 day 1 post](http://lcolladotor.github.io/2018/10/16/a Angela is presenting the continuation of her undergrad project. -`r blogdown::shortcode("tweet", "1052964260764995584")` +`r blogdown::shortcode("tweet", user="CharlestonCWKC", id="")` -`r blogdown::shortcode("tweet", "1052964989030490112")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` ### 6C 10 am #### Zongli Xu -`r blogdown::shortcode("tweet", "1052968599705464832")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` #### Lang Wu -`r blogdown::shortcode("tweet", "1052971499336781824")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1052972239342133249")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` Hmm, why use a 0.01 $R^2$ cutoff? Isn’t that super low? Maybe I missed something. -`r blogdown::shortcode("tweet", "1052972394401263616")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` Moving to Hawaii to start his career as a PI. He had nice pictures to motivate others to join his lab ;) @@ -103,32 +103,32 @@ Missed it: got there for the questions. #### Tarjinder Singh -`r blogdown::shortcode("tweet", "1052991257847377921")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` They built a browser for seeing the rare variants and the exome data. Not available yet. #### Rujia Dai -`r blogdown::shortcode("tweet", "1052992420244156416")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052993618246393856")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` #### Ying Ji -`r blogdown::shortcode("tweet", "1052995946051645440")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1052996602133008385")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` Bpred and Gpred genes have different expression over development: they intersect at birth. #### Kiran Girdhar -`r blogdown::shortcode("tweet", "1052998540669014016")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053000456228622336")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` * Looked at enhancers too. * Question from the audience about the differential shapes of the peaks between cases and controls. @@ -144,106 +144,106 @@ Used CRISPR to perturbe noncoding variants linked to SCZD risk: the ASoC SNPs. Then used single cell (10x Genomics) to measure expression. -`r blogdown::shortcode("tweet", "1053003636135972864")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` ### Other (morning) -`r blogdown::shortcode("tweet", "1052969248891359232")` +`r blogdown::shortcode("tweet", user="Single_Molecule", id="")` -`r blogdown::shortcode("tweet", "1052999291764203521")` +`r blogdown::shortcode("tweet", user="anavinuela", id="")` -`r blogdown::shortcode("tweet", "1053000619504500736")` +`r blogdown::shortcode("tweet", user="StatGenDan", id="")` ### Afternoon awards #### Eric Lander -`r blogdown::shortcode("tweet", "1053070553773293568")` +`r blogdown::shortcode("tweet", user="mycoacia", id="")` -`r blogdown::shortcode("tweet", "1053069188124762112")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1053083099674755072")` +`r blogdown::shortcode("tweet", user="raungar", id="")` #### Jan M. Friedman -`r blogdown::shortcode("tweet", "1053072202596147200")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1053074190515941376")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` -`r blogdown::shortcode("tweet", "1053074247956946944")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053075148725612544")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` ### Presidential Symposium #### John Hawks -`r blogdown::shortcode("tweet", "1053076488398888960")` +`r blogdown::shortcode("tweet", user="liminalphase", id="")` -`r blogdown::shortcode("tweet", "1053077309001891840")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` -`r blogdown::shortcode("tweet", "1053078045387444225")` +`r blogdown::shortcode("tweet", user="jlpcphotography", id="")` -`r blogdown::shortcode("tweet", "1053081405016571904")` +`r blogdown::shortcode("tweet", user="liminalphase", id="")` -`r blogdown::shortcode("tweet", "1053083391711571969")` +`r blogdown::shortcode("tweet", user="JHmeljak", id="")` #### Himla Soodyall -`r blogdown::shortcode("tweet", "1053083269640540161")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053085462456221697")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` -`r blogdown::shortcode("tweet", "1053085978976432128")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053087721990672384")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` -`r blogdown::shortcode("tweet", "1053088764405272576")` +`r blogdown::shortcode("tweet", user="thatdnaguy", id="")` -`r blogdown::shortcode("tweet", "1053089547448287232")` +`r blogdown::shortcode("tweet", user="yhtacgnol", id="")` #### Ambroise Wonkman -`r blogdown::shortcode("tweet", "1053090334236860416")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053090716551806976")` +`r blogdown::shortcode("tweet", user="GenomeBiology", id="")` ### Diversity -`r blogdown::shortcode("tweet", "1052956621477896192")` +`r blogdown::shortcode("tweet", user="sawerkar", id="")` -`r blogdown::shortcode("tweet", "1052968546945228801")` +`r blogdown::shortcode("tweet", user="Brooke_LaFlamme", id="")` -`r blogdown::shortcode("tweet", "1052970460089077764")` +`r blogdown::shortcode("tweet", user="tomsegal", id="")` Trolls :/ -`r blogdown::shortcode("tweet", "1053002564181024768")` +`r blogdown::shortcode("tweet", user="megkesh", id="")` -`r blogdown::shortcode("tweet", "1053091162372767744")` +`r blogdown::shortcode("tweet", user="yhtacgnol", id="")` ### Misc -`r blogdown::shortcode("tweet", "1052964337197797376")` +`r blogdown::shortcode("tweet", user="bioinfo_mark", id="")` -`r blogdown::shortcode("tweet", "1052964844381429761")` +`r blogdown::shortcode("tweet", user="Brooke_LaFlamme", id="")` This is hard. Some don’t mention the methods to avoid this issue, but then it becomes a “black box”. I guess that it can also be a “black box” if they don’t explain a bit what the model is/does. /shrug -`r blogdown::shortcode("tweet", "1052970283533889536")` +`r blogdown::shortcode("tweet", user="genome_sheriff", id="")` -`r blogdown::shortcode("tweet", "1052990699166035968")` +`r blogdown::shortcode("tweet", user="alon_goren", id="")` -`r blogdown::shortcode("tweet", "1053000667969683458")` +`r blogdown::shortcode("tweet", user="ErickLoomis", id="")` -`r blogdown::shortcode("tweet", "1052996814356373504")` +`r blogdown::shortcode("tweet", user="dgmacarthur", id="")` -`r blogdown::shortcode("tweet", "1053073453035642881")` +`r blogdown::shortcode("tweet", user="hendricks_ae", id="")` -`r blogdown::shortcode("tweet", "1053076114032205824")` +`r blogdown::shortcode("tweet", user="johnomix", id="")` -`r blogdown::shortcode("tweet", "1053081242042691584")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` @@ -259,9 +259,9 @@ This blog post was made possible thanks to: and everyone that I met at the tweetup -`r blogdown::shortcode("tweet", "1053167988109565952")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053180338380333056")` +`r blogdown::shortcode("tweet", user="meandertail", id="")` ### References diff --git a/content/post/2018-10-18-ashg18-tweet-summary-day-3.html b/content/post/2018-10-18-ashg18-tweet-summary-day-3.html index 57505df..b3d5ed4 100644 --- a/content/post/2018-10-18-ashg18-tweet-summary-day-3.html +++ b/content/post/2018-10-18-ashg18-tweet-summary-day-3.html @@ -20,16 +20,16 @@9:15 20BC
Jenna Carlson
-{{% tweet "1052956456578834432" %}} -{{% tweet "1052959881756430337" %}} +{{% tweet user="CharlestonCWKC" id="1052956456578834432" %}} +{{% tweet user="StatGenDan" id="1052959881756430337" %}}Christopher R. Gignoux
-{{% tweet "1052960113005215744" %}} -{{% tweet "1052961594487988224" %}} -{{% tweet "1052962128749969408" %}} +{{% tweet user="23andMeResearch" id="1052960113005215744" %}} +{{% tweet user="Brooke_LaFlamme" id="1052961594487988224" %}} +{{% tweet user="CharlestonCWKC" id="1052962128749969408" %}} -{{% tweet "1052962347810086913" %}} +{{% tweet user="ElenaSorokin" id="1052962347810086913" %}}Angela Andaleon
@@ -38,22 +38,22 @@Angela Andaleon
“Aspiring doctor Angela Andaleon”^_^
Angela is presenting the continuation of her undergrad project.
-{{% tweet "1052964260764995584" %}} -{{% tweet "1052964989030490112" %}} +{{% tweet user="CharlestonCWKC" id="1052964260764995584" %}} +{{% tweet user="23andMeResearch" id="1052964989030490112" %}}6C 10 am
Zongli Xu
-{{% tweet "1052968599705464832" %}} +{{% tweet user="michaelhoffman" id="1052968599705464832" %}}Lang Wu
-{{% tweet "1052971499336781824" %}} -{{% tweet "1052972239342133249" %}} +{{% tweet user="michaelhoffman" id="1052971499336781824" %}} +{{% tweet user="michaelhoffman" id="1052972239342133249" %}}Hmm, why use a 0.01 \(R^2\) cutoff? Isn’t that super low? Maybe I missed something.
-{{% tweet "1052972394401263616" %}} +{{% tweet user="michaelhoffman" id="1052972394401263616" %}}Moving to Hawaii to start his career as a PI. He had nice pictures to motivate others to join his lab ;)
Hailiang Huang
Tarjinder Singh
-{{% tweet "1052991257847377921" %}} +{{% tweet user="lcolladotor" id="1052991257847377921" %}}They built a browser for seeing the rare variants and the exome data. Not available yet.
Rujia Dai
-{{% tweet "1052992420244156416" %}} -{{% tweet "1052993618246393856" %}} +{{% tweet user="lcolladotor" id="1052992420244156416" %}} +{{% tweet user="lcolladotor" id="1052993618246393856" %}}Ying Ji
-{{% tweet "1052995946051645440" %}} -{{% tweet "1052996602133008385" %}} +{{% tweet user="lcolladotor" id="1052995946051645440" %}} +{{% tweet user="lcolladotor" id="1052996602133008385" %}}Bpred and Gpred genes have different expression over development: they intersect at birth.
Kiran Girdhar
-{{% tweet "1052998540669014016" %}} -{{% tweet "1053000456228622336" %}} +{{% tweet user="lcolladotor" id="1052998540669014016" %}} +{{% tweet user="lcolladotor" id="1053000456228622336" %}}Siwei Zhang
Looked at SNPs associated with ATAC-seq data (ASoC ?).
Used CRISPR to perturbe noncoding variants linked to SCZD risk: the ASoC SNPs.
Then used single cell (10x Genomics) to measure expression.
-{{% tweet "1053003636135972864" %}} +{{% tweet user="lcolladotor" id="1053003636135972864" %}}Other (morning)
-{{% tweet "1052969248891359232" %}} -{{% tweet "1052999291764203521" %}} -{{% tweet "1053000619504500736" %}} +{{% tweet user="Single_Molecule" id="1052969248891359232" %}} +{{% tweet user="anavinuela" id="1052999291764203521" %}} +{{% tweet user="StatGenDan" id="1053000619504500736" %}}Afternoon awards
Eric Lander
-{{% tweet "1053070553773293568" %}} -{{% tweet "1053069188124762112" %}} -{{% tweet "1053083099674755072" %}} +{{% tweet user="mycoacia" id="1053070553773293568" %}} +{{% tweet user="23andMeResearch" id="1053069188124762112" %}} +{{% tweet user="raungar" id="1053083099674755072" %}}Jan M. Friedman
-{{% tweet "1053072202596147200" %}} -{{% tweet "1053074190515941376" %}} -{{% tweet "1053074247956946944" %}} -{{% tweet "1053075148725612544" %}} +{{% tweet user="23andMeResearch" id="1053072202596147200" %}} +{{% tweet user="23andMeResearch" id="1053074190515941376" %}} +{{% tweet user="michaelhoffman" id="1053074247956946944" %}} +{{% tweet user="averydavisbell" id="1053075148725612544" %}}Presidential Symposium
John Hawks
-{{% tweet "1053076488398888960" %}} -{{% tweet "1053077309001891840" %}} -{{% tweet "1053078045387444225" %}} -{{% tweet "1053081405016571904" %}} -{{% tweet "1053083391711571969" %}} +{{% tweet user="liminalphase" id="1053076488398888960" %}} +{{% tweet user="thatdnaguy" id="1053077309001891840" %}} +{{% tweet user="jlpcphotography" id="1053078045387444225" %}} +{{% tweet user="liminalphase" id="1053081405016571904" %}} +{{% tweet user="JHmeljak" id="1053083391711571969" %}}Himla Soodyall
-{{% tweet "1053083269640540161" %}} -{{% tweet "1053085462456221697" %}} -{{% tweet "1053085978976432128" %}} -{{% tweet "1053087721990672384" %}} -{{% tweet "1053088764405272576" %}} -{{% tweet "1053089547448287232" %}} +{{% tweet user="michaelhoffman" id="1053083269640540161" %}} +{{% tweet user="cgonzagaj" id="1053085462456221697" %}} +{{% tweet user="michaelhoffman" id="1053085978976432128" %}} +{{% tweet user="thatdnaguy" id="1053087721990672384" %}} +{{% tweet user="thatdnaguy" id="1053088764405272576" %}} +{{% tweet user="yhtacgnol" id="1053089547448287232" %}}Ambroise Wonkman
-{{% tweet "1053090334236860416" %}} -{{% tweet "1053090716551806976" %}} +{{% tweet user="michaelhoffman" id="1053090334236860416" %}} +{{% tweet user="GenomeBiology" id="1053090716551806976" %}}Diversity
-{{% tweet "1052956621477896192" %}} -{{% tweet "1052968546945228801" %}} -{{% tweet "1052970460089077764" %}} +{{% tweet user="sawerkar" id="1052956621477896192" %}} +{{% tweet user="Brooke_LaFlamme" id="1052968546945228801" %}} +{{% tweet user="tomsegal" id="1052970460089077764" %}}Trolls :/
-{{% tweet "1053002564181024768" %}} -{{% tweet "1053091162372767744" %}} +{{% tweet user="megkesh" id="1053002564181024768" %}} +{{% tweet user="yhtacgnol" id="1053091162372767744" %}}Misc
-{{% tweet "1052964337197797376" %}} -{{% tweet "1052964844381429761" %}} +{{% tweet user="bioinfo_mark" id="1052964337197797376" %}} +{{% tweet user="Brooke_LaFlamme" id="1052964844381429761" %}}This is hard. Some don’t mention the methods to avoid this issue, but then it becomes a “black box”. I guess that it can also be a “black box” if they don’t explain a bit what the model is/does. /shrug
-{{% tweet "1052970283533889536" %}} -{{% tweet "1052990699166035968" %}} -{{% tweet "1053000667969683458" %}} -{{% tweet "1052996814356373504" %}} -{{% tweet "1053073453035642881" %}} -{{% tweet "1053076114032205824" %}} -{{% tweet "1053081242042691584" %}} +{{% tweet user="genome_sheriff" id="1052970283533889536" %}} +{{% tweet user="alon_goren" id="1052990699166035968" %}} +{{% tweet user="ErickLoomis" id="1053000667969683458" %}} +{{% tweet user="dgmacarthur" id="1052996814356373504" %}} +{{% tweet user="hendricks_ae" id="1053073453035642881" %}} +{{% tweet user="johnomix" id="1053076114032205824" %}} +{{% tweet user="michaelhoffman" id="1053081242042691584" %}}Acknowledgments
@@ -176,8 +176,8 @@Acknowledgments
and everyone that I met at the tweetup
-{{% tweet "1053167988109565952" %}} -{{% tweet "1053180338380333056" %}} +{{% tweet user="michaelhoffman" id="1053167988109565952" %}} +{{% tweet user="meandertail" id="1053180338380333056" %}}References
diff --git a/content/post/2018-10-19-ashg18-tweet-summary-day-4.Rmd b/content/post/2018-10-19-ashg18-tweet-summary-day-4.Rmd index 540e1fd..37f9dab 100644 --- a/content/post/2018-10-19-ashg18-tweet-summary-day-4.Rmd +++ b/content/post/2018-10-19-ashg18-tweet-summary-day-4.Rmd @@ -46,80 +46,80 @@ Had #diversitymatters and many flags including the rainbow one in her last slide #### Benjamin Neale -`r blogdown::shortcode("tweet", "1053356294369759233")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1053356661694324736")` +`r blogdown::shortcode("tweet", user="saralpulit", id="")` -`r blogdown::shortcode("tweet", "1053356800609705984")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053360343408246784")` +`r blogdown::shortcode("tweet", user="ellenmschmidt", id="")` All results are available to download for free from his lab website! #### Barbara Stranger -`r blogdown::shortcode("tweet", "1053369322981085184")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` ### Other (morning) -`r blogdown::shortcode("tweet", "1053319220048486400")` +`r blogdown::shortcode("tweet", user="Misha_Vysotskiy", id="")` -`r blogdown::shortcode("tweet", "1053320618194522113")` +`r blogdown::shortcode("tweet", user="artwuster", id="")` -`r blogdown::shortcode("tweet", "1053324083771789313")` +`r blogdown::shortcode("tweet", user="dccc_phd", id="")` -`r blogdown::shortcode("tweet", "1053358670925316096")` +`r blogdown::shortcode("tweet", user="iGenomics", id="")` -`r blogdown::shortcode("tweet", "1053363725376282624")` +`r blogdown::shortcode("tweet", user="skerfoot", id="")` ### Afternoon -`r blogdown::shortcode("tweet", "1053427841029693440")` +`r blogdown::shortcode("tweet", user="splon", id="")` -`r blogdown::shortcode("tweet", "1053428153857728512")` +`r blogdown::shortcode("tweet", user="splon", id="")` -`r blogdown::shortcode("tweet", "1053429511604195328")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053429846821429249")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` -`r blogdown::shortcode("tweet", "1053433460721836032")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` -`r blogdown::shortcode("tweet", "1053432233610989568")` +`r blogdown::shortcode("tweet", user="_chriscole_", id="")` -`r blogdown::shortcode("tweet", "1053429016739241984")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` ### Diversity -`r blogdown::shortcode("tweet", "1053322523973013504")` +`r blogdown::shortcode("tweet", user="ColleenMacmurdo", id="")` -`r blogdown::shortcode("tweet", "1053363947154243584")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` -`r blogdown::shortcode("tweet", "1053365583566188544")` +`r blogdown::shortcode("tweet", user="ReillyLikesIt", id="")` -`r blogdown::shortcode("tweet", "1053367064168022016")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` ### Misc -`r blogdown::shortcode("tweet", "1053320504122036224")` +`r blogdown::shortcode("tweet", user="AleMedinaRivera", id="")` -`r blogdown::shortcode("tweet", "1053320437814325248")` +`r blogdown::shortcode("tweet", user="robinfchan", id="")` -`r blogdown::shortcode("tweet", "1053353588146155520")` +`r blogdown::shortcode("tweet", user="JedMSP", id="")` -`r blogdown::shortcode("tweet", "1053356648247418881")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053358887737442305")` +`r blogdown::shortcode("tweet", user="CatCafeSanDiego", id="")` -`r blogdown::shortcode("tweet", "1053365107235807233")` +`r blogdown::shortcode("tweet", user="bioinfo_mark", id="")` -`r blogdown::shortcode("tweet", "1053434810150993921")` +`r blogdown::shortcode("tweet", user="23andMeResearch", id="")` ### Acknowledgments diff --git a/content/post/2018-10-19-ashg18-tweet-summary-day-4.html b/content/post/2018-10-19-ashg18-tweet-summary-day-4.html index 4d7e381..07cf83b 100644 --- a/content/post/2018-10-19-ashg18-tweet-summary-day-4.html +++ b/content/post/2018-10-19-ashg18-tweet-summary-day-4.html @@ -25,51 +25,51 @@Cecilia Lingdren
Benjamin Neale
-{{% tweet "1053356294369759233" %}} -{{% tweet "1053356661694324736" %}} -{{% tweet "1053356800609705984" %}} -{{% tweet "1053360343408246784" %}} +{{% tweet user="averydavisbell" id="1053356294369759233" %}} +{{% tweet user="saralpulit" id="1053356661694324736" %}} +{{% tweet user="lcolladotor" id="1053356800609705984" %}} +{{% tweet user="ellenmschmidt" id="1053360343408246784" %}}All results are available to download for free from his lab website!
Barbara Stranger
-{{% tweet "1053369322981085184" %}} +{{% tweet user="lcolladotor" id="1053369322981085184" %}}Other (morning)
-{{% tweet "1053319220048486400" %}} -{{% tweet "1053320618194522113" %}} -{{% tweet "1053324083771789313" %}} -{{% tweet "1053358670925316096" %}} -{{% tweet "1053363725376282624" %}} +{{% tweet user="Misha_Vysotskiy" id="1053319220048486400" %}} +{{% tweet user="artwuster" id="1053320618194522113" %}} +{{% tweet user="dccc_phd" id="1053324083771789313" %}} +{{% tweet user="iGenomics" id="1053358670925316096" %}} +{{% tweet user="skerfoot" id="1053363725376282624" %}}Afternoon
-{{% tweet "1053427841029693440" %}} -{{% tweet "1053428153857728512" %}} -{{% tweet "1053429511604195328" %}} -{{% tweet "1053429846821429249" %}} -{{% tweet "1053433460721836032" %}} -{{% tweet "1053432233610989568" %}} -{{% tweet "1053429016739241984" %}} +{{% tweet user="splon" id="1053427841029693440" %}} +{{% tweet user="splon" id="1053428153857728512" %}} +{{% tweet user="michaelhoffman" id="1053429511604195328" %}} +{{% tweet user="cgonzagaj" id="1053429846821429249" %}} +{{% tweet user="cgonzagaj" id="1053433460721836032" %}} +{{% tweet user="_chriscole_" id="1053432233610989568" %}} +{{% tweet user="michaelhoffman" id="1053429016739241984" %}}Diversity
-{{% tweet "1053322523973013504" %}} -{{% tweet "1053363947154243584" %}} -{{% tweet "1053365583566188544" %}} -{{% tweet "1053367064168022016" %}} +{{% tweet user="ColleenMacmurdo" id="1053322523973013504" %}} +{{% tweet user="averydavisbell" id="1053363947154243584" %}} +{{% tweet user="ReillyLikesIt" id="1053365583566188544" %}} +{{% tweet user="averydavisbell" id="1053367064168022016" %}}Misc
-{{% tweet "1053320504122036224" %}} -{{% tweet "1053320437814325248" %}} -{{% tweet "1053353588146155520" %}} -{{% tweet "1053356648247418881" %}} -{{% tweet "1053358887737442305" %}} -{{% tweet "1053365107235807233" %}} -{{% tweet "1053434810150993921" %}} +{{% tweet user="AleMedinaRivera" id="1053320504122036224" %}} +{{% tweet user="robinfchan" id="1053320437814325248" %}} +{{% tweet user="JedMSP" id="1053353588146155520" %}} +{{% tweet user="michaelhoffman" id="1053356648247418881" %}} +{{% tweet user="CatCafeSanDiego" id="1053358887737442305" %}} +{{% tweet user="bioinfo_mark" id="1053365107235807233" %}} +{{% tweet user="23andMeResearch" id="1053434810150993921" %}}Acknowledgments
diff --git a/content/post/2018-10-20-ashg18-tweet-summary-day-5.Rmd b/content/post/2018-10-20-ashg18-tweet-summary-day-5.Rmd index 17d2a6e..f8567cf 100644 --- a/content/post/2018-10-20-ashg18-tweet-summary-day-5.Rmd +++ b/content/post/2018-10-20-ashg18-tweet-summary-day-5.Rmd @@ -42,15 +42,15 @@ Continuing from my [ASHG18 day 1 post](http://lcolladotor.github.io/2018/10/16/a #### Jane Loveland -`r blogdown::shortcode("tweet", "1053673447040184320")` +`r blogdown::shortcode("tweet", user="ensembl", id="")` -`r blogdown::shortcode("tweet", "1053682492316672001")` +`r blogdown::shortcode("tweet", user="dgmacarthur", id="")` -`r blogdown::shortcode("tweet", "1053683827359404034")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053684796398817280")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053685569027330048")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` @@ -58,11 +58,11 @@ Continuing from my [ASHG18 day 1 post](http://lcolladotor.github.io/2018/10/16/a #### Genevieve Stein-O’Brien -`r blogdown::shortcode("tweet", "1053693765007724544")` +`r blogdown::shortcode("tweet", user="NeBanovich", id="")` #### Yu Hu -`r blogdown::shortcode("tweet", "1053699063990734848")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` Mingyao Li and Nancy Zhang were his advisors. @@ -74,88 +74,88 @@ Hierarchical model with normal + (missed it) + log + poisson #### Stephanie Kravitz -`r blogdown::shortcode("tweet", "1053700571121610752")` +`r blogdown::shortcode("tweet", user="aaronquinlan", id="")` -`r blogdown::shortcode("tweet", "1053700970616504320")` +`r blogdown::shortcode("tweet", user="aaronquinlan", id="")` -`r blogdown::shortcode("tweet", "1053702240412651521")` +`r blogdown::shortcode("tweet", user="aaronquinlan", id="")` -`r blogdown::shortcode("tweet", "1053703467091423232")` +`r blogdown::shortcode("tweet", user="aaronquinlan", id="")` #### Li Chen -`r blogdown::shortcode("tweet", "1053705292880310273")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053706299051925504")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053708045170032640")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` #### Nicholas Bogard -`r blogdown::shortcode("tweet", "1053709703916580865")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053711826813280256")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` ### Other -`r blogdown::shortcode("tweet", "1053674723970813952")` +`r blogdown::shortcode("tweet", user="DaleYuzuki", id="")` -`r blogdown::shortcode("tweet", "1053693658518642688")` +`r blogdown::shortcode("tweet", user="JEMgenes", id="")` -`r blogdown::shortcode("tweet", "1053697490124386304")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053709216878194688")` +`r blogdown::shortcode("tweet", user="averydavisbell", id="")` ### Diversity -`r blogdown::shortcode("tweet", "1053674078966493184")` +`r blogdown::shortcode("tweet", user="jsdron", id="")` -`r blogdown::shortcode("tweet", "1053677254260088834")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` -`r blogdown::shortcode("tweet", "1053681995912368128")` +`r blogdown::shortcode("tweet", user="GeneticsSociety", id="")` -`r blogdown::shortcode("tweet", "1053707734288261120")` +`r blogdown::shortcode("tweet", user="genome_sheriff", id="")` -`r blogdown::shortcode("tweet", "1053682864301105152")` +`r blogdown::shortcode("tweet", user="SeymaKatrinli", id="")` -`r blogdown::shortcode("tweet", "1053686351789346818")` +`r blogdown::shortcode("tweet", user="terencecwong", id="")` ### Misc -`r blogdown::shortcode("tweet", "1053684376679010305")` +`r blogdown::shortcode("tweet", user="JansonWhite", id="")` -`r blogdown::shortcode("tweet", "1053693247418073088")` +`r blogdown::shortcode("tweet", user="michaelhoffman", id="")` -`r blogdown::shortcode("tweet", "1053698711216214016")` +`r blogdown::shortcode("tweet", user="aaronquinlan", id="")` -`r blogdown::shortcode("tweet", "1053699388881592320")` +`r blogdown::shortcode("tweet", user="spendlove_sarah", id="")` -`r blogdown::shortcode("tweet", "1053704802549428225")` +`r blogdown::shortcode("tweet", user="wouter_decoster", id="")` -`r blogdown::shortcode("tweet", "1053707539844521984")` +`r blogdown::shortcode("tweet", user="apicoplast", id="")` -`r blogdown::shortcode("tweet", "1053708117576306690")` +`r blogdown::shortcode("tweet", user="apicoplast", id="")` -`r blogdown::shortcode("tweet", "1053710100811018240")` +`r blogdown::shortcode("tweet", user="genome_sheriff", id="")` ### The end And that's a wrap! -`r blogdown::shortcode("tweet", "1053716471962992641")` +`r blogdown::shortcode("tweet", user="cgonzagaj", id="")` ### Acknowledgments diff --git a/content/post/2018-10-20-ashg18-tweet-summary-day-5.html b/content/post/2018-10-20-ashg18-tweet-summary-day-5.html index 8b06736..6660a95 100644 --- a/content/post/2018-10-20-ashg18-tweet-summary-day-5.html +++ b/content/post/2018-10-20-ashg18-tweet-summary-day-5.html @@ -20,22 +20,22 @@6C 9:15 am
Jane Loveland
-{{% tweet "1053673447040184320" %}} -{{% tweet "1053682492316672001" %}} -{{% tweet "1053683827359404034" %}} -{{% tweet "1053684796398817280" %}} -{{% tweet "1053685569027330048" %}} +{{% tweet user="ensembl" id="1053673447040184320" %}} +{{% tweet user="dgmacarthur" id="1053682492316672001" %}} +{{% tweet user="lcolladotor" id="1053683827359404034" %}} +{{% tweet user="lcolladotor" id="1053684796398817280" %}} +{{% tweet user="lcolladotor" id="1053685569027330048" %}}6B 10 am
Genevieve Stein-O’Brien
-{{% tweet "1053693765007724544" %}} +{{% tweet user="NeBanovich" id="1053693765007724544" %}}Yu Hu
-{{% tweet "1053699063990734848" %}} +{{% tweet user="lcolladotor" id="1053699063990734848" %}}Mingyao Li and Nancy Zhang were his advisors.
Hierarchical model with normal + (missed it) + log + poisson
Yu Hu
20 BC 10:30 am
Stephanie Kravitz
-{{% tweet "1053700571121610752" %}} -{{% tweet "1053700970616504320" %}} -{{% tweet "1053702240412651521" %}} -{{% tweet "1053703467091423232" %}} +{{% tweet user="aaronquinlan" id="1053700571121610752" %}} +{{% tweet user="aaronquinlan" id="1053700970616504320" %}} +{{% tweet user="aaronquinlan" id="1053702240412651521" %}} +{{% tweet user="aaronquinlan" id="1053703467091423232" %}}Li Chen
-{{% tweet "1053705292880310273" %}} -{{% tweet "1053706299051925504" %}} -{{% tweet "1053708045170032640" %}} +{{% tweet user="lcolladotor" id="1053705292880310273" %}} +{{% tweet user="lcolladotor" id="1053706299051925504" %}} +{{% tweet user="lcolladotor" id="1053708045170032640" %}}Nicholas Bogard
-{{% tweet "1053709703916580865" %}} -{{% tweet "1053711826813280256" %}} +{{% tweet user="lcolladotor" id="1053709703916580865" %}} +{{% tweet user="lcolladotor" id="1053711826813280256" %}}Other
-{{% tweet "1053674723970813952" %}} -{{% tweet "1053693658518642688" %}} -{{% tweet "1053697490124386304" %}} -{{% tweet "1053709216878194688" %}} +{{% tweet user="DaleYuzuki" id="1053674723970813952" %}} +{{% tweet user="JEMgenes" id="1053693658518642688" %}} +{{% tweet user="michaelhoffman" id="1053697490124386304" %}} +{{% tweet user="averydavisbell" id="1053709216878194688" %}}Diversity
-{{% tweet "1053674078966493184" %}} -{{% tweet "1053677254260088834" %}} -{{% tweet "1053681995912368128" %}} -{{% tweet "1053707734288261120" %}} -{{% tweet "1053682864301105152" %}} -{{% tweet "1053686351789346818" %}} +{{% tweet user="jsdron" id="1053674078966493184" %}} +{{% tweet user="lcolladotor" id="1053677254260088834" %}} +{{% tweet user="GeneticsSociety" id="1053681995912368128" %}} +{{% tweet user="genome_sheriff" id="1053707734288261120" %}} +{{% tweet user="SeymaKatrinli" id="1053682864301105152" %}} +{{% tweet user="terencecwong" id="1053686351789346818" %}}Misc
-{{% tweet "1053684376679010305" %}} -{{% tweet "1053693247418073088" %}} -{{% tweet "1053698711216214016" %}} -{{% tweet "1053699388881592320" %}} -{{% tweet "1053704802549428225" %}} -{{% tweet "1053707539844521984" %}} -{{% tweet "1053708117576306690" %}} -{{% tweet "1053710100811018240" %}} +{{% tweet user="JansonWhite" id="1053684376679010305" %}} +{{% tweet user="michaelhoffman" id="1053693247418073088" %}} +{{% tweet user="aaronquinlan" id="1053698711216214016" %}} +{{% tweet user="spendlove_sarah" id="1053699388881592320" %}} +{{% tweet user="wouter_decoster" id="1053704802549428225" %}} +{{% tweet user="apicoplast" id="1053707539844521984" %}} +{{% tweet user="apicoplast" id="1053708117576306690" %}} +{{% tweet user="genome_sheriff" id="1053710100811018240" %}}The end
And that’s a wrap!
-{{% tweet "1053716471962992641" %}} +{{% tweet user="cgonzagaj" id="1053716471962992641" %}}Acknowledgments
diff --git a/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.Rmd b/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.Rmd index 5e18cee..6be448f 100644 --- a/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.Rmd +++ b/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.Rmd @@ -112,9 +112,9 @@ And you are done! 🙌🏽🎉 ### Quick embedding -Note that my blog is powered by `r CRANpkg('blogdown')` `r citep(bib[['blogdown']])` which has the function `blogdown::shortcode()` for embedding tweets. For example, `blogdown::shortcode("tweet", "1054380320533950464")` generates the `hugo` syntax code which then `hugo` renders into the tweet itself. +Note that my blog is powered by `r CRANpkg('blogdown')` `r citep(bib[['blogdown']])` which has the function `blogdown::shortcode()` for embedding tweets. For example, `blogdown::shortcode("tweet", user="lcolladotor", id="1054380320533950464")` generates the `hugo` syntax code which then `hugo` renders into the tweet itself. -`r blogdown::shortcode("tweet", "1054380320533950464")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1054380320533950464")` As an alternative, we can use Twitter itself by copy-pasting the code for embedding the tweet directly from the Twitter app/website. On the top right side menu on the tweet itself, select _Embed Tweet_ diff --git a/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.html b/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.html index a68f921..fbc2c60 100644 --- a/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.html +++ b/content/post/2018-10-23-steps-for-writing-a-twitter-summary-conference-blog-post.html @@ -68,8 +68,8 @@My steps detailed
Quick embedding
-Note that my blog is powered by blogdown (Xie, Hill, and Thomas, 2017) which has the function blogdown::shortcode() for embedding tweets. For example, blogdown::shortcode("tweet", "1054380320533950464") generates the hugo syntax code which then hugo renders into the tweet itself.
Note that my blog is powered by blogdown (Xie, Hill, and Thomas, 2017) which has the function blogdown::shortcode() for embedding tweets. For example, blogdown::shortcode("tweet", user="lcolladotor", id="1054380320533950464") generates the hugo syntax code which then hugo renders into the tweet itself.
As an alternative, we can use Twitter itself by copy-pasting the code for embedding the tweet directly from the Twitter app/website. On the top right side menu on the tweet itself, select Embed Tweet
then copy-paste the HTML code into your post.
diff --git a/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.Rmd b/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.Rmd index f3ae21b..caf7fdf 100644 --- a/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.Rmd +++ b/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.Rmd @@ -124,17 +124,17 @@ For the full list of LCG-UNAM alumni, check http://www.lcg.unam.mx/es/titulados. Everyone has their own story of breaking barriers and overcoming challenges. All of them would love the opportunity to present their work and to compete for funds to travel to conferences and do so. -`r blogdown::shortcode("tweet", "1052349309818232832")` +`r blogdown::shortcode("tweet", user="AleMedinaRivera", id="")` To close off, here are some inspiring or thought provoking tweets: -`r blogdown::shortcode("tweet", "1056571008662949888")` +`r blogdown::shortcode("tweet", user="mgschiavon", id="")` -`r blogdown::shortcode("tweet", "1055124381876260865")` +`r blogdown::shortcode("tweet", user="WeAreRLadies", id="")` -`r blogdown::shortcode("tweet", "1019597807395770368")` +`r blogdown::shortcode("tweet", user="daniela_oaks", id="")` -`r blogdown::shortcode("tweet", "1001985730904764417")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="")` In Mexico, Day of the Dead was just last week (November 2nd) and Aldo's birthday would have been a few weeks ago on October 27th. It was time to finally write this blog post. I hope that you take something positive from it. @@ -199,11 +199,11 @@ session_info() ### Reactions to the blog post -`r blogdown::shortcode("tweet", "1060038817774657536")` +`r blogdown::shortcode("tweet", user="lbolanos68", id="")` -`r blogdown::shortcode("tweet", "1060116424415436800")` +`r blogdown::shortcode("tweet", user="mreyespri", id="")` -`r blogdown::shortcode("tweet", "1060355174546505729")` +`r blogdown::shortcode("tweet", user="paleogenomics", id="")` diff --git a/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.html b/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.html index c5b0808..349b233 100644 --- a/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.html +++ b/content/post/2018-11-06-a-knot-of-threads-from-cshl-to-lcg-unam-to-aldo-barrientos-to-diversity-scholarship-opportunities.html @@ -83,12 +83,12 @@Invite LCG-UNAM alumni
For the full list of LCG-UNAM alumni, check http://www.lcg.unam.mx/es/titulados. There are 257 listed as of October 25, 2018.
Everyone has their own story of breaking barriers and overcoming challenges. All of them would love the opportunity to present their work and to compete for funds to travel to conferences and do so.
-{{% tweet "1052349309818232832" %}} +{{% tweet user="AleMedinaRivera" id="1052349309818232832" %}}To close off, here are some inspiring or thought provoking tweets:
-{{% tweet "1056571008662949888" %}} -{{% tweet "1055124381876260865" %}} -{{% tweet "1019597807395770368" %}} -{{% tweet "1001985730904764417" %}} +{{% tweet user="mgschiavon" id="1056571008662949888" %}} +{{% tweet user="WeAreRLadies" id="1055124381876260865" %}} +{{% tweet user="daniela_oaks" id="1019597807395770368" %}} +{{% tweet user="lcolladotor" id="1001985730904764417" %}}In Mexico, Day of the Dead was just last week (November 2nd) and Aldo’s birthday would have been a few weeks ago on October 27th. It was time to finally write this blog post. I hope that you take something positive from it.
@@ -225,9 +225,9 @@
Reproducibility
Reactions to the blog post
-{{% tweet "1060038817774657536" %}} -{{% tweet "1060116424415436800" %}} -{{% tweet "1060355174546505729" %}} +{{% tweet user="lbolanos68" id="1060038817774657536" %}} +{{% tweet user="mreyespri" id="1060116424415436800" %}} +{{% tweet user="paleogenomics" id="1060355174546505729" %}}diff --git a/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.Rmd b/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.Rmd index ecb50d4..d3b55b3 100644 --- a/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.Rmd +++ b/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.Rmd @@ -43,9 +43,9 @@ Recently I’ve been thinking on the subject of asking for help. In short, it’ I mostly encounter the situation of asking for help in two scenarios. One is about work, mostly R programming. The other one is about personal issues. There are plenty more, like spelling, cultural references, word definitions and academic citations. -`r blogdown::shortcode("tweet", "1061281934666543106")` +`r blogdown::shortcode("tweet", user="lcolladotor", id="1061281934666543106")` -`r blogdown::shortcode("tweet", "1061288301825413121")` +`r blogdown::shortcode("tweet", user="lpachter", id="1061288301825413121")` ### Programming context diff --git a/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.html b/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.html index dff2a2b..10c4b30 100644 --- a/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.html +++ b/content/post/2018-11-12-asking-for-help-is-challenging-but-is-typically-worth-it.html @@ -21,8 +21,8 @@
Recently I’ve been thinking on the subject of asking for help. In short, it’s hard to ask for help. It involves admitting to yourself that you can’t solve the problem alone, opening yourself up, hoping that another person will understand you and guide you in the right direction. Thus it can be painful if your request for help is misunderstood, met with criticism or ignored. Regardless of these obstacles, I think that the potential rewards make it worth it.
I mostly encounter the situation of asking for help in two scenarios. One is about work, mostly R programming. The other one is about personal issues. There are plenty more, like spelling, cultural references, word definitions and academic citations.
-{{% tweet "1061281934666543106" %}} -{{% tweet "1061288301825413121" %}} +{{% tweet user="lcolladotor" id="1061281934666543106" %}} +{{% tweet user="lpachter" id="1061288301825413121" %}}Programming context
In the context of R and Bioconductor, and programming in general, it can be scary to ask for help in public forums such as a GitHub issue page, the Bioconductor Support website, the RStudio Community website, etc. That’s because you might get a very short reply that can seem unhelpful if it involves terms you are not familiar with (though it might be a precise reply). There are also issues with online communities that I won’t get into. Over the years, I’ve tried to help those who will potentially answer my questions by:
diff --git a/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.Rmd b/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.Rmd index 09680e8..acc0c88 100644 --- a/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.Rmd +++ b/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.Rmd @@ -89,7 +89,7 @@ Thanks [EpiRen](https://twitter.com/EpiRen/status/1091844480112775168)! Thanks Baltimore Sun staff and the Baltimore Police! -`r blogdown::shortcode('tweet', '1091466386868748288')` +`r blogdown::shortcode('tweet', user='lcolladotor', id='1091466386868748288')` This blog post was made possible thanks to: diff --git a/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.html b/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.html index 6179510..b87b00b 100644 --- a/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.html +++ b/content/post/2019-02-03-the-power-of-tapping-into-your-community-for-support.html @@ -52,7 +52,7 @@And drop by to enjoy the awesome food and women art!
Acknowledgments
Thanks EpiRen!
Thanks Baltimore Sun staff and the Baltimore Police!
-{{% tweet "1091466386868748288" %}} +{{% tweet user="lcolladotor" id="1091466386868748288" %}}This blog post was made possible thanks to:
This blog post was first published at the CDSBMexico website.
-{{% tweet "1101339389395943424" %}} +{{% tweet user="CDSBMexico" id="1101339389395943424" %}}About 10 months ago we announced our plans to start a new community of R/Bioconductor developers in Mexico and Latin America. The National Bioinformatics Node (NNB-UNAM in Spanish) has organized workshops in bioinformatics and R since 2006 and more frequently since 2010. Last year, 2018, there were five simultaneous one week workshops:
The hugo-academic theme which powers my website is active and frequently updated. I don’t update my website that frequently anymore, but I recently found about many of their changes when I made the CDSB website.
One of the new features that I liked quite a bit was the ability to have landing pages for each person in your team. I wanted to improve my website’s section describing the people I’ve mentored so I decided to update my personal website too. Once I started this process, I realized that talks and publications had drastically changed. You could now have an image per talk or publication, add tags to them and link them to projects. Furthermore, I noticed that I hadn’t uploaded all my posters nor the slides for all my talks. So this whole process of updating my website took quite a bit of time! All this new information is also reflected on my CV now.
The end result: alumni
diff --git a/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.Rmd b/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.Rmd index 791ae1f..5bb0ecb 100644 --- a/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.Rmd +++ b/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.Rmd @@ -74,7 +74,7 @@ Yet recently, I've grown more conscious of the fact that I've been around longer So, while I still network like I used to, a portion of my time is spent checking on others I know so they are not alone and helping them when possible make the connections they want. Doing so also helps me strengthen my own connections as I detailed near the end of my [tweet series post-rstudio::conf(2020)](https://twitter.com/lcolladotor/status/1224034242537119744?s=20). -`r blogdown::shortcode('tweet', '1224034315429994502')` +`r blogdown::shortcode('tweet', user='lcolladotor', id='1224034315429994502')` ### Feeling empowered diff --git a/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.html b/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.html index 32d2ea8..b235758 100644 --- a/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.html +++ b/content/post/2020-02-03-conference-feelings-from-newbie-to-sponsor.html @@ -51,7 +51,7 @@As a… sponsor?
The desire to avoid feeling alone is something that can still shape my behavior at a conference. If possible, I like having some close friends I can hang out with and be relaxed, almost as if we were not at the conference. They provide a zone that I can enter, recharge, and then head out of it again to continue networking.
Yet recently, I’ve grown more conscious of the fact that I’ve been around longer than others. Meaning that I might be the person that knows X or Y that they want to meet or talk to. That is, I find myself more frequently in the position of introducing people and helping them make connections. Somehow asking X or Y: “hey, do you have a minute? Can I introduce you to someone?” is way less scary even if I’m not the closest acquaintance of X or Y. That is, becoming a sponsor: mostly the access portion as defined by this blog post by Emily Robinson.
So, while I still network like I used to, a portion of my time is spent checking on others I know so they are not alone and helping them when possible make the connections they want. Doing so also helps me strengthen my own connections as I detailed near the end of my tweet series post-rstudio::conf(2020).
-{{% tweet "1224034315429994502" %}} +{{% tweet user="lcolladotor" id="1224034315429994502" %}}Feeling empowered
diff --git a/content/post/2020-02-12-learning-from-our-search-history.Rmd b/content/post/2020-02-12-learning-from-our-search-history.Rmd index 73b2a19..d207852 100644 --- a/content/post/2020-02-12-learning-from-our-search-history.Rmd +++ b/content/post/2020-02-12-learning-from-our-search-history.Rmd @@ -80,7 +80,7 @@ I do think that asking for help can be worth it and even wrote a [previous blog Now, we all ask for help regardless of how long we have been writing code. Here's an example tweet that conveys the same message. There are thousands of such tweets online. -`r blogdown::shortcode('tweet', '1085227527587561472')` +`r blogdown::shortcode('tweet', user='lyzidiamond', id='1085227527587561472')` #### We are diverse @@ -222,7 +222,7 @@ This blog post was made possible thanks to: I would also like to acknowledge the general inspiration I've gotten from [Alison Hill](https://twitter.com/apreshill)'s educational work. Once the `rstudio::conf(2020)` videos are available, check the work her intern [Desirée de Leon](https://twitter.com/dcossyle) showcased which is related to the following tweet. -`r blogdown::shortcode('tweet', '1161679518777712641')` +`r blogdown::shortcode('tweet', user='dcossyle', id='1161679518777712641')` P.S. _dinámica_ in Spanish is used for a set of exercises that have a specific purpose in mind. I now realize that _dynamic_ doesn't hold the same meaning. Oh well 🤷🏾 diff --git a/content/post/2020-02-12-learning-from-our-search-history.html b/content/post/2020-02-12-learning-from-our-search-history.html index fd151aa..5e5b840 100644 --- a/content/post/2020-02-12-learning-from-our-search-history.html +++ b/content/post/2020-02-12-learning-from-our-search-history.html @@ -44,7 +44,7 @@In practice
Trying for a while then asking for help is all good in practice. However, asking for help is very challenging. It’s scary, you open yourself because you show what you don’t know to other people, and sadly historically many questions have been met with negative feedback on the Internet. Thus, they can make you feel dumb, stupid and many other negative emotions.
I do think that asking for help can be worth it and even wrote a previous blog post on this subject. Some reasons why it’s worth it include being able to move on with your work 2, you might learn something new, and if you follow the strategies for helping others help you, you might even figure out the answer yourself.
Now, we all ask for help regardless of how long we have been writing code. Here’s an example tweet that conveys the same message. There are thousands of such tweets online.
-{{% tweet "1085227527587561472" %}} +{{% tweet user="lyzidiamond" id="1085227527587561472" %}}We are diverse
@@ -165,7 +165,7 @@Acknowledgments
I would also like to acknowledge the general inspiration I’ve gotten from Alison Hill’s educational work. Once the rstudio::conf(2020) videos are available, check the work her intern Desirée de Leon showcased which is related to the following tweet.
P.S. dinámica in Spanish is used for a set of exercises that have a specific purpose in mind. I now realize that dynamic doesn’t hold the same meaning. Oh well 🤷🏾
diff --git a/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.Rmd b/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.Rmd
index d690d3a..a2bb8d7 100644
--- a/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.Rmd
+++ b/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.Rmd
@@ -62,7 +62,7 @@ All of us have been building our careers with other types of data and/or experim
But it's not my first adventure and I've picked up skills and confidence along the way. In particular, I've written [Bioconductor](https://bioconductor.org) R packages, dealt with `pkgdown`/`travis` issues like [#1206](https://github.com/r-lib/pkgdown/issues/1206), made `r BiocStyle::CRANpkg('shiny')` web applications, analyzed large RNA-seq data, [written papers using GoogleDocs](http://lcolladotor.github.io/2019/04/02/how-to-write-academic-documents-with-googledocs/#.XlnnqJNKg0o), gotten better at asking for help, among other skills.
-`r blogdown::shortcode('tweet', '1233186931590123522')`
+`r blogdown::shortcode('tweet', user='lcolladotor', id='1233186931590123522')`
I've also gotten more comfortable with the idea that I can't do it all. Others will shortly develop new methods for this type of data, or proper infrastructure to handle this data, or faster visualizations, and so goes on the list. But I'm proud and really happy to say that we built quite the robust prototype. Plus maybe we'll be involved in shaping this future.
@@ -72,7 +72,7 @@ And you noticed that I mentioned _we_. That's because I have been learning over
I feel like we complemented each other quite well and all I can confidently say that our new adventure so far has been very stimulating, even it cost me some sleep.
-`r blogdown::shortcode('tweet', '1230107491372912641')`
+`r blogdown::shortcode('tweet', user='lcolladotor', id='1230107491372912641')`
### Spatial transcriptomics
@@ -85,13 +85,13 @@ In recent years I've been working with data from the human brain 🧠. The [Lieb
snRNA-seq and scRNA-seq are great because you can measure what genes (pieces of the cell) are active, classify them into groups, and use prior knowledge to label these groups. However, you lose information about what part of the tissue they come from. That's where technologies for _spatial transcriptomics_, that is, measuring gene expression 🧬 as close a possible to the single cell level yet retaining spatial coordinates are being actively developed. Thus, you end up with two main sources of data: the gene expression measurements but also images from the tissue (_histology_ information). [My coworkers anticipated](https://doi.org/10.1038/s41386-019-0484-7) what could these technologies be used for and what type of research questions they help us answer.
-`r blogdown::shortcode('tweet', '1232009768006344704')`
+`r blogdown::shortcode('tweet', user='andrewejaffe', id='1232009768006344704')`
### Our project's history
My coworkers got early access to a specific new type of spatial transcriptomics technology called [Visium from the 10x Genomics company](https://wp.10xgenomics.com/spatial-transcriptomics/) and started piloting it on human brain tissue. They recruited me to their project in early November 2019 (11th) and I recruited more colleagues in early December (4th). Today on February 28th 2020 we made public our research advances, code, and software we built for this project.
-`r blogdown::shortcode('tweet', '1232468210886144000')`
+`r blogdown::shortcode('tweet', user='mwgerber', id='1232468210886144000')`
Given that we have many potential websites others can find us through, we decided to unify as much as possible the documentation even if that meant repeating it. The basic start of our documentation is included further below.
@@ -209,7 +209,7 @@ Now, these are early days of the 10x Genomics Visium platform and there's much w
Finally, here's the pre-print twitter thread:
-`r blogdown::shortcode('tweet', '1233661576433061888')`
+`r blogdown::shortcode('tweet', user='lcolladotor', id='1233661576433061888')`
Thank you for getting this far!
diff --git a/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.html b/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.html
index f399bee..03e3c43 100644
--- a/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.html
+++ b/content/post/2020-02-29-diving-together-into-the-unknown-world-of-spatial-transcriptomics.html
@@ -42,7 +42,7 @@
All of us have been building our careers with other types of data and/or experiments, and taking on a new type of data knowing we had an early access advantage over others was quite the challenge. I don’t know about my co-authors, but maybe some of them shared thoughts like mine that were along the lines: can I do this? can I make it work? do my analysis choices make sense? what will experts think of doing once they have access to this data? All while racing against time, even if it was just an illusion in our minds.
But it’s not my first adventure and I’ve picked up skills and confidence along the way. In particular, I’ve written Bioconductor R packages, dealt with pkgdown/travis issues like #1206, made shiny web applications, analyzed large RNA-seq data, written papers using GoogleDocs, gotten better at asking for help, among other skills.
I’ve also gotten more comfortable with the idea that I can’t do it all. Others will shortly develop new methods for this type of data, or proper infrastructure to handle this data, or faster visualizations, and so goes on the list. But I’m proud and really happy to say that we built quite the robust prototype. Plus maybe we’ll be involved in shaping this future.
And you noticed that I mentioned we. That’s because I have been learning over the years how to foster collaborations. This particular project involved working with two other members of my workplace who are awesome and that I didn’t know that well. It also involved a new collaboration with someone I’ve known for a while now (we initially met through Twitter in 2014) but hadn’t had the chance to work with. Thus we dove into the unknown together 👩🚀🧑🚀.
diff --git a/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.Rmd b/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.Rmd index dfb3dfd..db6af3e 100644 --- a/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.Rmd +++ b/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.Rmd @@ -84,7 +84,7 @@ Once I had my main packages, I started adding some from LIBD, some from CRAN, an I was curious about how these changes affected my list of installed R packages and used my older [2017 blog post](http://lcolladotor.github.io/2017/05/04/updating-r/#.X6ICiIhKguU) code to check this. That resulted in [this list](https://gist.github.com/lcolladotor/d0af9b22e3806af196233655dce54fde) which shows 423 installed R packages and 589 that I used to have installed. I suspect that several of them will come back. For example, I needed to install `r BiocStyle::CRANpkg("blogdown")` to work on this blog post. Some of the 423 packages are new, like `r BiocStyle::Githubpkg("gadenbuie/rsthemes")` which we recently learned about at the LIBD rstats club. -`r blogdown::shortcode("tweet", "1312187753371561984")` +`r blogdown::shortcode("tweet", user="LIBDrstats", id="1312187753371561984")` ### Config files diff --git a/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.html b/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.html index d5ab950..bec5dab 100644 --- a/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.html +++ b/content/post/2020-11-03-cleaning-up-my-r-packages-and-config-files.en.html @@ -59,7 +59,7 @@ ), dependencies = TRUE, update = FALSE)Once I had my main packages, I started adding some from LIBD, some from CRAN, and other ones from Bioconductor. You can see the full list at my team’s website under Config files: R setup; R packages.
I was curious about how these changes affected my list of installed R packages and used my older 2017 blog post code to check this. That resulted in this list which shows 423 installed R packages and 589 that I used to have installed. I suspect that several of them will come back. For example, I needed to install blogdown to work on this blog post. Some of the 423 packages are new, like rsthemes which we recently learned about at the LIBD rstats club.
-{{% tweet "1312187753371561984" %}} +{{% tweet user="LIBDrstats" id="1312187753371561984" %}}Config files
Since I was doing all this work on both my macOS and Windows laptops for my R setup, I also went ahead and cleaned up a bit my configuration files. I have several of them with settings that I recommend others to use. That’s why I wrote a little “chapter” about them on my team’s website. The list includes:
diff --git a/public b/public new file mode 160000 index 0000000..1746999 --- /dev/null +++ b/public @@ -0,0 +1 @@ +Subproject commit 17469994f61754a65a93d65fbcfac23ef7757ffa