NAMESPACE

# Import
import("BSgenome.Mmusculus.UCSC.mm10")
import("rtracklayer")
import("GenomicRanges")
import("glmnet")
import("HiTC")
import("hicrep")
import("Matrix")
import("glmnet")
import("data.table")
import("mgcv")
import("L0Learn")
import("doMC")

importFrom("GenomeInfoDb", "seqlengths", "seqlevels", "seqlevels<-")
importFrom("rtracklayer","import")
importFrom("GenomicRanges", "GRanges", "width","findOverlaps","shift")
importFrom("glmnet", "cv.glmnet")
importFrom("HiTC", "x_intervals", "intdata")
importFrom("hicrep", "htrain", "get.scc")
importFrom("Matrix", "as.matrix", "Matrix","sparseMatrix")
importFrom("mgcv", "bam")
importFrom("stats", "as.formula", "lm", "glm", "prcomp")
importFrom("utils", "read.table")
importFrom("IRanges", "IRanges", "IRangesList", "breakInChunks","Views","RleViewsList","viewMeans")
importFrom("S4Vectors","queryHits")
importFrom("MASS", "glm.nb")
importFrom("L0Learn", "L0Learn.cvfit")


# Export
exportPattern("^[[:alpha:]]+")