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CRAN-like R package repositories for R-hub

These repositories are experimental. They are not compatible with install.packages(), only with pak.

Can use PPPM:

  • ubuntu-next (CRAN's r-patched-linux-x86_64)
  • ubuntu-release (CRAN's r-release-linux-x86_64)

Ubuntu 22.04 + R-devel (ubuntu-22.04-R4.5)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04/4.5",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

  • ubuntu-clang (CRAN's r-devel-linux-x86_64-debian-clang)
  • ubuntu-gcc12 (CRAN's r-devel-linux-x86_64-debian-gcc)
  • ubuntu-gcc (CRAN's r-devel-linux-x86_64-fedora-gcc)
  • nold (extra noLD)
  • lto (extra LTO)
  • donttest (extra donttest)
  • gcc-asan (extra gcc-ASAN and gcc-UBSAN)
  • noomp (extra noOMP)
  • rcnst (extra rcnst)
  • rlibro (extra rlibro)
  • noremap (extra noremap)
  • rchk (extra rchk)

Ubuntu 22.04 + R-devel + libc++ (ubuntu-22.04-R4.5-libc++)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04/4.5/libc++",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

  • c23 (extra C23)
  • clang-asan (extra clang-ASAN and clang-UBSAN)
  • clang16
  • clang17
  • clang18
  • clang19
  • ubuntu-libc++ (CRAN's r-devel-linux-x86_64-fedora-clang)

Fedora 38 + R-devel (fedora-38-R4.5)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/fedora-38/4.5",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

  • atlas (extra ATLAS)
  • gcc13 (extra gcc13)
  • intel (extra Intel)
  • mkl (extra MKL)
  • openblas (extra OpenBLAS)
  • nosuggests (extra noSuggests)
  • valgrind (extra valgrind)

Fedora 40 + R-devel (fedora-40-R4.5)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/fedora-40/4.5",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

  • gcc14 (extra `gcc141)

Ubuntu 22.04 + R-release on aarch64 (ubuntu-22.04-aarch64-R4.4)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04-aarch64/4.4",
  CRAN = "https://cloud.r-project.org"
))

Ubuntu 24.04 + R-release on aarch64 (ubuntu-24.04-aarch64-R4.4)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-24.04-aarch64/4.4",
  CRAN = "https://cloud.r-project.org"
))

macOS 11 Big Sur or later, x86_64 + R-devel (macos-x86_64-R4.5)

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/macos-x86_64/4.5",
  CRAN = "https://cloud.r-project.org"
))

macOS 11 Big Sur or later, arm64 + R-devel (macos-arm64-R4.5)

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/macos-arm64/4.5",
  CRAN = "https://cloud.r-project.org"
))

Ubuntu 22.04 + R 4.1 on s390x (ubuntu-22.04-s390x-R4.1)

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04-s390x/4.1",
  CRAN = "https://cloud.r-project.org"
))

Not needed?

We probably do not need to create containers for these CRAN platforms:

  • extra BLAS
  • extra gcc11
  • extra gcc12

Not possible (= very hard) currently

We practically cannot implement this platform currently:

  • m1mac (extra M1mac)

By CRAN container

CRAN Package Check Flavors

Name CRAN ✓ Repo
ubuntu-clang r-devel-linux-x86_64-debian-clang ✓ ubuntu-22.04-R4.5
ubuntu-gcc12 r-devel-linux-x86_64-debian-gcc ✓ ubuntu-22.04-R4.5
ubuntu-libc++ r-devel-linux-x86_64-fedora-clang ubuntu-22.04-R4.5-libc++
fedora-gcc r-devel-linux-x86_64-fedora-gcc fedora-38-R4.5
windows r-devel-windows-x86_64 ✓ CRAN
ubuntu-next r-patched-linux-x86_64 ✓ PPM
ubuntu-release r-release-linux-x86_64 ✓ PPM
macos-arm64 r-release-macos-arm64 ✓ CRAN
macos r-release-macos-x86_64 ✓ CRAN
windows r-release-windows-x86_64 ✓ CRAN
macos-arm64 r-oldrel-macos-arm64 ✓ CRAN
windows r-oldrel-windows-x86_64 ✓ CRAN

CRAN Package Check Issue Kinds

Name CRAN ✓ Repo Description
atlas ATLAS ✓ fedora-38-R4.5 Tests with alternative BLAS/LAPACK implementations
blas BLAS` Use of BLAS/LAPACK from C/C++ code
intel Intel ✓ fedora-38-R4.5 Checks with Intel oneAPI 2023.x compilers
lto LTO ubuntu-22.04-R4.5 Tests for link-time optimization type mismatches
m1mac M1mac CRAN? Checks on a M1 (arm64) Mac
mkl MKL ✓ fedora-38-R4.5 Tests with alternative BLAS/LAPACK implementations
openblas OpenBLAS fedora-38-R4.5 Tests with alternative BLAS/LAPACK implementations
c23 C23 ✓ ubuntu-22.04-R4.5-libc++ Checks of compiling C code in C23 mode
clang-asan clang-ASAN ✓ ubuntu-22.04-R4.5-libc++ Tests of memory access errors using AddressSanitizer
clang-asan clang-UBSAN ✓ ubuntu-22.04-R4.5-libc++ Tests of memory access errors using Undefined Behavior Sanitizer
clang16 clang16 ✓ ubuntu-22.04-R4.5-libc++ Checks with Clang 16.0.0
clang17 clang17 ✓ ubuntu-22.04-R4.5-libc++ Checks with LLVM pre-17.0.0
clang18 clang18 ✓ ubuntu-22.04-R4.5-libc++ Checks with LLVM pre-18.0.0
clang19 clang19 ✓ ubuntu-22.04-R4.5-libc++ Checks with LLVM pre-19.0.0
donttest donttest ✓ ubuntu-22.04-R4.5 Tests including \donttest examples
gcc-asan gcc-ASAN ubuntu-22.04-R4.5 Tests of memory access errors using AddressSanitizer
gcc-asan gcc-UBSAN ubuntu-22.04-R4.5 Tests of memory access errors using Undefined Behavior Sanitizer
gcc11 gcc11 Checks with GCC trunk aka 11.0
gcc12 gcc12 Installation issues with fedora-gcc but not fedora-clang
gcc13 gcc13 ✓ fedora-38-R4.5 Checks with GCC trunk aka 13.0
gcc14 gcc14 ✓ fedora-40-R4.5 Checks with GCC trunk aka 14.0
nold noLD` ✓ ubuntu-22.04-R4.5 Tests without long double
noomp noOMP ubuntu-22.04-R4.5 Tests without OpenMP support
nosuggests noSuggests ✓ fedora-38-R4.5 Tests without suggested packages
valgrind valgrind ✓ fedora-38-R4.5 Tests of memory access errors using valgrind
rchk rchk ✓ ubuntu-22.04-R4.5 Checks of native code (C/C++) based on static code analysis
rcnst rcnst ubuntu-22.04-R4.5 Checks of corruption of constants
rlibro rlibro ubuntu-22.04-R4.5 Checks with read-only user library
noremap noRemap ✓ ubuntu-22.04-R4.5 Checks with -DR_NO_REMAP used for C++ code

License

MIT @ The R Consortium, Posit PBC