Dockerfile

FROM mambaorg/micromamba:1.5.8-alpine3.20

USER root
ARG APP_USER="hms"
RUN addgroup -S hms && adduser -S -G hms hms

ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH=/opt/conda/bin:/opt/conda/envs/env/bin:/opt/micromamba/bin:/opt/micromamba/envs/env/bin:$PATH

RUN apk add --upgrade apk-tools

RUN apk add wget bzip2 ca-certificates \
    py3-pip make sqlite gfortran git \
    mercurial subversion gdal geos
RUN apk update
RUN apk upgrade --available
RUN apk upgrade busybox --repository=http://dl-cdn.alpinelinux.org/alpine/edge/main

ARG CONDA_ENV="base"

COPY environment.yml /src/environment.yml
RUN micromamba install -n $CONDA_ENV -f /src/environment.yml
RUN micromamba clean -p -t -l --trash -y

COPY uwsgi.ini /etc/uwsgi/
COPY . /src/hms_flask
RUN chmod 755 /src/hms_flask/start_flask.sh
WORKDIR /src/
EXPOSE 8080

ENV PYTHONPATH=/src:/src/hms_flask/:$CONDA_ENV:$PYTHONPATH
ENV PATH=/src:/src/hms_flask/:$CONDA_ENV:$PATH

RUN python3 -m pip install --upgrade pip
RUN python3 -m pip install urllib3==2.2.2

RUN apk del gfortran
RUN apk del wget
RUN rm -R /opt/conda/pkgs/postgres*
RUN rm -R /opt/conda/bin/postgres*
RUN find /opt/conda/ -name 'test.key' -delete || true
RUN find /opt/conda/ -name 'localhost.key' -delete || true
RUN find /opt/conda/ -name 'server.pem' -delete || true
RUN find /opt/conda/ -name 'client.pem' -delete || true
RUN find /opt/conda/ -name 'password_protected.pem' -delete || true
# ------------------------- #

#RUN chown -R $APP_USER:$APP_USER /src
#USER $APP_USER

#ENTRYPOINT ["tail", "-f", "/dev/null"]
CMD ["sh", "/src/hms_flask/start_flask.sh"]