DESCRIPTION

Package: PIVOT
Type: Package
Title: PIVOT: Platform for Interactive analysis and Visualization Of Transcriptomics data
Version: 1.0.0
Author: Qin Zhu
Maintainer: Qin Zhu <qinzhu@outlook.com>
Description: Main interface of PIVOT.
    Includes clustering, PCA, etc.
Depends:
    R (>= 3.1.0),
    shiny,
    shinydashboard,
    shinyBS,
    igraph
Imports:
    Biobase,
    BiocGenerics (>= 0.23.3),
    RColorBrewer,
    plotly,
    ggplot2,
    ggvis,
    networkD3,
    penalizedLDA,
    threejs,
    gplots,
    heatmaply,
    STRINGdb,
    monocle,
    scde,
    SingleCellExperiment,
    scater,
    shinyAce,
    rmarkdown,
    Rtsne,
    htmltools,
    futile.logger,
    VennDiagram,
    grid,
    DESeq2,
    dendextend,
    readr,
    pryr,
    dplyr,
    DT (>= 0.2),
    lubridate,
    shinyFiles,
    Rcpp,
    rstudioapi,
    edgeR,
    visNetwork,
    shinyjs,
    GenomeInfoDb,
    biomaRt,
    MASS,
    readxl,
    RUVSeq,
    caret,
    GO.db,
    org.Hs.eg.db, 
    org.Mm.eg.db,
    destiny,
    SC3,
    miniUI, 
    htmlwidgets,
    viridis,
    tibble
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews: Software
RoxygenNote: 7.1.0