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This repository has been archived by the owner on Dec 29, 2023. It is now read-only.
Addition Description
I have a use case where I would like to compute the ILR transform on an entire tensor of (samples) x (features) x (monte_carlo_estimates). Doing so would open the doors for enabling Bayesian phylogenetic inference for differential abundance tasks.
Current Behavior
Doesn't exist
Proposed Behavior
Introduce a new function qiime gneiss ilr-phylogenetic-tensor taking the FeatureTensor type proposed in q2-differential as input.
We are already seeing much promise of utilizing these types in a half a dozen plugins (including q2-gneiss). For instance, below is an Empress plot that was enabled by applying the ILR transform to tensors generated by Bayesian differential abundance analysis.
Addition Description
I have a use case where I would like to compute the ILR transform on an entire tensor of (samples) x (features) x (monte_carlo_estimates). Doing so would open the doors for enabling Bayesian phylogenetic inference for differential abundance tasks.
Current Behavior
Doesn't exist
Proposed Behavior
Introduce a new function
qiime gneiss ilr-phylogenetic-tensor
taking the FeatureTensor type proposed in q2-differential as input.Comments
This is going to depend on biocore/gneiss#288
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