Installation not finishing in Ubuntu 12.10 and Ubuntu 13.04

[carazo]

I am trying to install qiime-deploy following your instructions. In previous versions (like 1.5 or 1.6) I have no problem, but in this version installer keeps saying:

Still deploying applications and data...

Hours and hours after installing Galaxy. The activate.sh is not in qiime_software and nor print_qiime_config also.

Which kind of problem can be this?

Thank you very much for the software and also for answering it.

[apollobovey]

I have the same problem : Still deploying applications and data...

[mhlunimelb]

Same problem here too, 12 hrs later: Still deploying apps and data. I ended up closing terminal and trying to re-deploy, but now has all sorts of errors and missing dependencies

[apollobovey]

Dear friend:
I have solved the problem and installed QIIME onto ubuntu13.04 successfully.
i use this command-1:
sudo python qiime-deploy.py $HOME/qiime_software/ -f $HOME/qiime-deploy-conf/qiime-1.7.0/qiime.conf --force-remove-failed-dirs
if the same problem show up, and try the command 1 again. most installed package will be skiped. and you can carefully exam the progress and try to find out which software can not deploy, and then try to download it and install it manually.yes! May be you should check your system and re-install some related package or upgrade something. it depends on your system. be patience and try the command-1 again. i have tried many times even re-install the ubuntu system. finally all package were deployed.
then type:source $HOME/.bashrc
And then most importantly : I can find the file qiime-1.7.0-released in your $HOME/qiime_software/ .
open a new terminal window and get into this directory.
then i typed Command-2: sudo python setup.py install
then: source $HOME/.bashrc

Finally, I need to create and edit a custom qiime_config file to tell QIIME where to look for the QIIME scripts. Create a custom qiime_config file by copying the default qiime_config packaged with QIIME:

cp $HOME/qiime_software/qiime-1.7.0/qiime/support_files/qiime_config $HOME/.qiime_config

then i can find the .qiime_config file in your $home/. it's a hidden file and Locked. Use root identity to log in and open it with gedit and Find the line beginning qiime_scripts_dir and add a tab, followed by your QIIME scripts directory /usr/local/bin/

like this : qiime_scripts_dir/usr/local/bin/

you need to

Finish!

your should see this guide: http://qiime.org/install/install.html

Good Luck!

Bo Zeng

Sichuan Agricultural University, Chengdu, China.

Apollo

At 2013-07-19 10:35:21,mhlunimelb [email protected] wrote:

Same problem here too, 12 hrs later: Still deploying apps and data. I ended up closing terminal and trying to re-deploy, but now has all sorts of errors and missing dependencies

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Reply to this email directly or view it on GitHub.

[carazo]

Bo,

Thank so much, the installation has finished perfectly with your instructions.

I have been able to install it, executing repeteadly command 1.

With the rest of your instruction, the last details have been also completed.

Thank you again.