From 755581c84dc2ad5435f0a9798e48115f80015f2d Mon Sep 17 00:00:00 2001 From: Deepak Cherian Date: Sat, 14 Dec 2024 01:33:10 -0700 Subject: [PATCH] Fix interpolation when non-numeric coords are present. (#9887) * Fix interpolation when non-numeric coords are present. Closes #8099 Closes #9839 * fix * Add basic 1d test --------- Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> --- doc/whats-new.rst | 3 +++ xarray/core/dataset.py | 11 ++++++----- xarray/tests/test_interp.py | 38 +++++++++++++++++++++++++++++++++++++ 3 files changed, 47 insertions(+), 5 deletions(-) diff --git a/doc/whats-new.rst b/doc/whats-new.rst index 08e6218ca14..cbc59a708aa 100644 --- a/doc/whats-new.rst +++ b/doc/whats-new.rst @@ -47,6 +47,9 @@ Bug fixes By `Bruce Merry `_. - Fix unintended load on datasets when calling :py:meth:`DataArray.plot.scatter` (:pull:`9818`). By `Jimmy Westling `_. +- Fix interpolation when non-numeric coordinate variables are present (:issue:`8099`, :issue:`9839`). + By `Deepak Cherian `_. + Documentation ~~~~~~~~~~~~~ diff --git a/xarray/core/dataset.py b/xarray/core/dataset.py index ea17a69f827..d4a23ac275a 100644 --- a/xarray/core/dataset.py +++ b/xarray/core/dataset.py @@ -4185,7 +4185,7 @@ def _validate_interp_indexer(x, new_x): } variables: dict[Hashable, Variable] = {} - reindex: bool = False + reindex_vars: list[Hashable] = [] for name, var in obj._variables.items(): if name in indexers: continue @@ -4207,19 +4207,20 @@ def _validate_interp_indexer(x, new_x): # booleans and objects and retains the dtype but inside # this loop there might be some duplicate code that slows it # down, therefore collect these signals and run it later: - reindex = True + reindex_vars.append(name) elif all(d not in indexers for d in var.dims): # For anything else we can only keep variables if they # are not dependent on any coords that are being # interpolated along: variables[name] = var - if reindex: - reindex_indexers = { + if reindex_vars and ( + reindex_indexers := { k: v for k, (_, v) in validated_indexers.items() if v.dims == (k,) } + ): reindexed = alignment.reindex( - obj, + obj[reindex_vars], indexers=reindex_indexers, method=method_non_numeric, exclude_vars=variables.keys(), diff --git a/xarray/tests/test_interp.py b/xarray/tests/test_interp.py index d602cb96a6a..86532a26f65 100644 --- a/xarray/tests/test_interp.py +++ b/xarray/tests/test_interp.py @@ -1055,3 +1055,41 @@ def test_interp1d_complex_out_of_bounds() -> None: expected = da.interp(time=3.5, kwargs=dict(fill_value=np.nan + np.nan * 1j)) actual = da.interp(time=3.5) assert_identical(actual, expected) + + +@requires_scipy +def test_interp_non_numeric_1d() -> None: + ds = xr.Dataset( + { + "numeric": ("time", 1 + np.arange(0, 4, 1)), + "non_numeric": ("time", np.array(["a", "b", "c", "d"])), + }, + coords={"time": (np.arange(0, 4, 1))}, + ) + actual = ds.interp(time=np.linspace(0, 3, 7)) + + expected = xr.Dataset( + { + "numeric": ("time", 1 + np.linspace(0, 3, 7)), + "non_numeric": ("time", np.array(["a", "b", "b", "c", "c", "d", "d"])), + }, + coords={"time": np.linspace(0, 3, 7)}, + ) + xr.testing.assert_identical(actual, expected) + + +@requires_scipy +def test_interp_non_numeric_nd() -> None: + # regression test for GH8099, GH9839 + ds = xr.Dataset({"x": ("a", np.arange(4))}, coords={"a": (np.arange(4) - 1.5)}) + t = xr.DataArray( + np.random.randn(6).reshape((2, 3)) * 0.5, + dims=["r", "s"], + coords={"r": np.arange(2) - 0.5, "s": np.arange(3) - 1}, + ) + ds["m"] = ds.x > 1 + + actual = ds.interp(a=t, method="linear") + # with numeric only + expected = ds[["x"]].interp(a=t, method="linear") + assert_identical(actual[["x"]], expected)