Seg fault on initialSetup()

[davidfstein]

I installed rhapsody with pip. When I run rd.initialSetup() I get a seg fault:

>>> rd.initialSetup('/home/david/rhapsody')
@> You are running Rhapsody v0.9.8

@> Working directory set: /home/david/rhapsody
@> Classifiers folder created: /home/david/rhapsody/default_classifiers-sklearn_v0.24.2
@>
@> Training full classifier...
@> Logging into file: /home/david/rhapsody/default_classifiers-sklearn_v0.24.2/full/RF_training.log
@> Logging started at 2021-08-06 12:17:58.360781
@> 3918 out of 20361 cases ignored with missing features.
@> CV iteration # 1:   AUROC = 0.873   AUPRC = 0.932   OOB score = 0.811
@> CV iteration # 2:   AUROC = 0.869   AUPRC = 0.926   OOB score = 0.810
@> CV iteration # 3:   AUROC = 0.843   AUPRC = 0.910   OOB score = 0.810
@> CV iteration # 4:   AUROC = 0.853   AUPRC = 0.921   OOB score = 0.811
@> CV iteration # 5:   AUROC = 0.847   AUPRC = 0.919   OOB score = 0.813
@> CV iteration # 6:   AUROC = 0.860   AUPRC = 0.928   OOB score = 0.810
@> CV iteration # 7:   AUROC = 0.851   AUPRC = 0.921   OOB score = 0.813
@> CV iteration # 8:   AUROC = 0.848   AUPRC = 0.914   OOB score = 0.810
@> CV iteration # 9:   AUROC = 0.860   AUPRC = 0.914   OOB score = 0.810
@> CV iteration #10:   AUROC = 0.849   AUPRC = 0.921   OOB score = 0.810
@> ------------------------------------------------------------
@> Cross-validation summary:
@> training dataset size:   16443
@> fraction of positives:   0.690
@> mean AUROC:              0.855 +/- 0.009
@> mean AUPRC:              0.921 +/- 0.007
@> mean OOB score:          0.811 +/- 0.001
@> optimal cutoff*:         0.706 +/- 0.032
@> (* argmax of Youden's index)
@> feature importances:
@>                 wt_PSIC: 0.152
@>              Delta_PSIC: 0.202
@>                    SASA: 0.075
@>           ANM_MSF-chain: 0.082
@> ANM_effectiveness-chain: 0.086
@>   ANM_sensitivity-chain: 0.079
@>         stiffness-chain: 0.090
@>                 entropy: 0.108
@>               ranked_MI: 0.076
@>                  BLOSUM: 0.049
@> ------------------------------------------------------------
zsh: segmentation fault (core dumped)  python

System information:
Ubuntu 20.04
python=3.7.10
32 cores and 64GB RAM

pip list:

Package             Version
------------------- -------------------
async-generator     1.10
attrs               21.2.0
backcall            0.2.0
biopython           1.78
bleach              3.3.0
Bottleneck          1.3.2
certifi             2021.5.30
charset-normalizer  2.0.4
cycler              0.10.0
decorator           5.0.9
defusedxml          0.7.1
entrypoints         0.3
fonttools           4.25.0
idna                3.2
importlib-metadata  3.10.0
ipykernel           5.3.4
ipython             7.26.0
ipython-genutils    0.2.0
ipywidgets          7.6.3
jedi                0.18.0
Jinja2              3.0.0
joblib              1.0.1
jsonschema          3.2.0
jupyter             1.0.0
jupyter-client      6.1.12
jupyter-console     6.4.0
jupyter-core        4.7.1
jupyterlab-pygments 0.1.2
jupyterlab-widgets  1.0.0
kiwisolver          1.3.1
liac-arff           2.5.0
llvmlite            0.36.0
MarkupSafe          2.0.1
matplotlib          3.4.2
matplotlib-inline   0.1.2
mistune             0.8.4
mkl-fft             1.3.0
mkl-random          1.2.2
mkl-service         2.4.0
munkres             1.1.4
nbclient            0.5.3
nbconvert           5.5.0
nbformat            5.1.3
nest-asyncio        1.5.1
notebook            5.7.10
numba               0.53.1
numexpr             2.7.3
numpy               1.20.1
olefile             0.46
packaging           20.9
pandas              1.3.1
pandocfilters       1.4.3
parso               0.7.0
pexpect             4.8.0
pickleshare         0.7.5
Pillow              8.3.1
pip                 21.2.2
ProDy               2.0
prody-rhapsody      0.9.8
prometheus-client   0.11.0
prompt-toolkit      3.0.17
ptyprocess          0.7.0
pycparser           2.20
Pygments            2.9.0
pyparsing           2.4.7
pyrsistent          0.17.3
pytabix             0.1
python-dateutil     2.8.1
pytz                2021.1
pyzmq               20.0.0
qtconsole           5.1.0
QtPy                1.9.0
requests            2.26.0
scikit-learn        0.24.2
scipy               1.6.2
seaborn             0.11.1
Send2Trash          1.5.0
setuptools          52.0.0.post20210125
six                 1.16.0
terminado           0.9.4
testpath            0.4.4
threadpoolctl       2.2.0
tornado             6.1
tqdm                4.59.0
traitlets           5.0.5
typing-extensions   3.10.0.0
urllib3             1.26.6
wcwidth             0.2.5
webencodings        0.5.1
wheel               0.36.2
widgetsnbextension  3.5.1
zipp                3.4.1