diff --git a/paper/paper.md b/paper/paper.md index 0f75111f..68b59a20 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -54,7 +54,7 @@ generated by a latent state, $z_t$, which evolve according to a transition $u_t$, to steer the latent state dynamics and influence the observations. For example, SSMs are often used in neuroscience to model the dynamics of -neural spike train recordings [@vyas:2020]. Here, $y_t$ is a vector of spike +neural spike train recordings [@vyas2020computation]. Here, $y_t$ is a vector of spike counts from each of, say, 100 measured neurons. The activity of nearby neurons is often correlated, and SSMs can capture that correlation through a lower dimensional latent state, $z_t$. Finally, if we know that certain sensory inputs @@ -106,7 +106,7 @@ linear Gaussian SSMs. in machine learning research [@zhao2023revisiting; @lee2023switching; @chang2023low]. More sophisticated, special purpose models on top of `Dynamax`, like the Keypoint-MoSeq library for modeling postural dynamics -of animals [@Weinreb:2024]. Finally, the `Dynamax` tutorials are used as reference +of animals [@weinreb2024keypoint]. Finally, the `Dynamax` tutorials are used as reference examples in a major machine learning textbook [@murphy2023probabilistic]. # Acknowledgements