diff --git a/.github/workflows/docker.yaml b/.github/workflows/docker.yaml
index 14407cb7..e2049adc 100644
--- a/.github/workflows/docker.yaml
+++ b/.github/workflows/docker.yaml
@@ -4,6 +4,7 @@ on:
branches:
- main
- alpha
+
push:
branches:
- main
diff --git a/.github/workflows/package.yaml b/.github/workflows/package.yaml
index 32357c26..68c14778 100644
--- a/.github/workflows/package.yaml
+++ b/.github/workflows/package.yaml
@@ -1,12 +1,14 @@
name: Package
on:
- # Building on pull-requests, manual dispatch, and pushes to main; but restricting
- # publishing only to main pushes and manual dispatch with `if`s in specific steps.
- workflow_dispatch:
- workflow_run:
- workflows: ["Test"]
- types:
- - completed
+ push:
+ branches:
+ - main
+ - alpha
+
+ pull_request:
+ branches:
+ - main
+ - alpha
permissions:
id-token: write
@@ -14,7 +16,6 @@ permissions:
jobs:
package:
- if: github.ref_name == 'main' || github.ref_name == 'alpha'
name: Package
environment: production
runs-on: ubuntu-latest
diff --git a/.github/workflows/web-docs.yaml b/.github/workflows/web-docs.yaml
index b2d92753..76029bcf 100644
--- a/.github/workflows/web-docs.yaml
+++ b/.github/workflows/web-docs.yaml
@@ -2,11 +2,15 @@
name: Deploy API Documentation
on:
- # Run after Test
- workflow_run:
- workflows: ["Test"]
- types:
- - completed
+ pull_request:
+ branches:
+ - main
+ - alpha
+
+ push:
+ branches:
+ - main
+ - alpha
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
@@ -26,7 +30,6 @@ concurrency:
jobs:
# Single deploy job since we're just deploying
deploy:
- if: github.event.workflow_run.conclusion == 'success' && (github.base_ref == 'alpha' || github.base_ref == 'main')
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
diff --git a/README.md b/README.md
index 113b14be..18c89197 100644
--- a/README.md
+++ b/README.md
@@ -260,9 +260,9 @@ You can find all the workflows in the **[.github/workflows directory](https://gi
| **[Renovate](https://github.com/populationgenomics/cpg-flow/actions/workflows/renovate.yaml)** | Runs Renovate to update dependencies.
[![Renovate](https://github.com/populationgenomics/cpg-flow/actions/workflows/renovate.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/renovate.yaml) | `schedule` and `workflow_dispatch` |
| **[Update Badges](https://github.com/populationgenomics/cpg-flow/actions/workflows/update-badges.yaml)** | Updates badges.yaml with test results and coverage.
[![Update Badges](https://github.com/populationgenomics/cpg-flow/actions/workflows/update-badges.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/update-badges.yaml) | `workflow_run` (completed) |
| **[Test](https://github.com/populationgenomics/cpg-flow/actions/workflows/test.yaml)** | Runs unit tests and generates coverage reports.
[![Test](https://github.com/populationgenomics/cpg-flow/actions/workflows/test.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/test.yaml) | `push` |
-| **[Deploy API Documentation](https://github.com/populationgenomics/cpg-flow/actions/workflows/web-docs.yaml)** | Deploys API documentation to GitHub Pages.
[![Deploy API Documentation](https://github.com/populationgenomics/cpg-flow/actions/workflows/web-docs.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/web-docs.yaml) | `workflow_run` (completed) and `workflow_dispatch` |
+| **[Deploy API Documentation](https://github.com/populationgenomics/cpg-flow/actions/workflows/web-docs.yaml)** | Deploys API documentation to GitHub Pages.
[![Deploy API Documentation](https://github.com/populationgenomics/cpg-flow/actions/workflows/web-docs.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/web-docs.yaml) | `pull_request` on `main, alpha` and `push` on `main, alpha` and `workflow_dispatch` |
| **[Security Checks](https://github.com/populationgenomics/cpg-flow/actions/workflows/security.yaml)** | Performs security checks using pip-audit.
[![Security Checks](https://github.com/populationgenomics/cpg-flow/actions/workflows/security.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/security.yaml) | `workflow_dispatch` and `push` |
-| **[Package](https://github.com/populationgenomics/cpg-flow/actions/workflows/package.yaml)** | Packages the project and publishes it to PyPI and GitHub Releases.
[![Package](https://github.com/populationgenomics/cpg-flow/actions/workflows/package.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/package.yaml) | `workflow_dispatch` and `workflow_run` (completed) |
+| **[Package](https://github.com/populationgenomics/cpg-flow/actions/workflows/package.yaml)** | Packages the project and publishes it to PyPI and GitHub Releases.
[![Package](https://github.com/populationgenomics/cpg-flow/actions/workflows/package.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/package.yaml) | `push` on `main, alpha` and `pull_request` on `main, alpha` |
| **[Lint](https://github.com/populationgenomics/cpg-flow/actions/workflows/lint.yaml)** | Runs linting checks using pre-commit hooks.
[![Lint](https://github.com/populationgenomics/cpg-flow/actions/workflows/lint.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/lint.yaml) | `push` |
| **[Docker](https://github.com/populationgenomics/cpg-flow/actions/workflows/docker.yaml)** | Builds and pushes Docker images for the project.
[![Docker](https://github.com/populationgenomics/cpg-flow/actions/workflows/docker.yaml/badge.svg)](https://github.com/populationgenomics/cpg-flow/actions/workflows/docker.yaml) | `pull_request` on `main, alpha` and `push` on `main, alpha` and `workflow_dispatch` |
diff --git a/docs/update_readme.py b/docs/update_readme.py
index 427de093..d6a4a7f7 100644
--- a/docs/update_readme.py
+++ b/docs/update_readme.py
@@ -1,5 +1,7 @@
import os
import re
+import sys
+from copy import deepcopy
import yaml
@@ -81,13 +83,19 @@ def update_readme(readme_file):
with open(readme_file) as file:
content = file.read()
+ previous_content = deepcopy(content)
content = update_workflow_table(content)
content = update_readme_links(content)
+ if content == previous_content:
+ print('No changes detected in the README.md')
+ sys.exit(0)
+
with open(readme_file, 'w') as file:
file.write(content)
print(f'Readme updated: {readme_file}')
+ sys.exit(100)
def update_workflow_table(content):