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Drosophila sechellia #855

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jradrion opened this issue Apr 8, 2021 · 0 comments · Fixed by #872
Closed

Drosophila sechellia #855

jradrion opened this issue Apr 8, 2021 · 0 comments · Fixed by #872
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enhancement New feature or request Species Issues relating to species data in the catalog

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@jradrion
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jradrion commented Apr 8, 2021

  • Name: Drosophila sechellia
  • Common name: Drosophila sechellia

Description: any other discussion or useful background? (optional)

Currently trying to track down the relevant information

Demographic information:

  • [] generation time in years
  • [] "default" population size

Chromosome structure:

Note: The assembly should be chromosome-level, i.e., not composed of thousands of scaffolds.

Recombination rates:

  • [] genetic map of recombination rates (as a hapmap or csv file)
  • [] genome-wide mean recombination rate (which will be used as the default)

Mutation rate:

  • [] genome-wide mean mutation rate

Demographic model:

  • [] as a list of population sizes, growth rates, migration rates, etcetera. (optional)
  • [] citation

Other information:

These are things we don't currently use, but will want to use in the future:

  • [] sex determination system, and which chromosomes are the sex chromosome(s)
  • [] ploidy
@jradrion jradrion added the enhancement New feature or request label Apr 8, 2021
@jeromekelleher jeromekelleher added the Species Issues relating to species data in the catalog label Apr 8, 2021
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Labels
enhancement New feature or request Species Issues relating to species data in the catalog
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