FloatingPointError: divide by zero encountered in log

[aguilar-gomez]

I have a lot of warnings of long ROHS, but why is this giving an error?
python3.8

This is the command I am running: smc++ estimate -o KOR 1.25e-8 --cores 6 -p 0.5 KOR.*.smc.gz

1096 smcpp.analysis.base INFO theta: 0.000100
1097 smcpp.analysis.base INFO rho: 0.000100
1097 smcpp.data_filter INFO Loading data...
1691 smcpp.data_filter INFO 2.88 Gb of data
1698 smcpp.data_filter INFO 1 population
1701 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr17.smc.gz: 
[ 141925  212496   81384 3883555   70531  285514  361626   74390   56123  442623  697586   50913   53032] (base pairs)
1705 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr11.smc.gz: 
[ 192356   97412   79478 3716844  100065   68881  103867  174302] (base pairs)
1708 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr9.smc.gz: 
[   57888   192180   297238    67504   235196   349697   561834    55085    58006    60110   132425    82160    54385
   247643   286950   112772 17250289   966857   245950   881607   393259   296625    94958   204129   114513   348612
    85647   104802   304466  1308385    99832   531422   707868   177147] (base pairs)
1711 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr10.smc.gz: 
[  50943   84459 2139844  245327   68197   60557   85892   79745   76838   62619   67699  239731  120891  133143] (base pairs)
1712 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr21.smc.gz: 
[5066103  234296  697308 1677101  752008  158999 1078044  132225  440601   96456 2374083  214094  121521  143962
   50384  195090  103745   52906] (base pairs)
1715 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr19.smc.gz: 
[ 246963 2822458   56274] (base pairs)
1723 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr1.smc.gz: 
[   55319   541941   149480   125536   164856    74249    67301   106310    80872   156061    95297    84360    84326
    76930   211613   211353   173683   101088  3193325   138891 18378680    77601   517688    58090   378103   239255
   126184   313451    70821    82178   387268   281244   171388    69631    90386    66176] (base pairs)
1725 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr13.smc.gz: 
[16056768  2117859   101241    71516    68077   112196    50021    50665] (base pairs)
1730 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr12.smc.gz: 
[  61392  114103 1478458  312027  627050] (base pairs)
1732 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr15.smc.gz: 
[17010073  2711216   199277    81704   227738   329527    67055   466540   687802    81922   189326   181797    56640
   138742   263649   403058   129814    63811   255329   126948    53774   108644   219160   113409    60962    66055] (base p
airs)
1737 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr3.smc.gz: 
[ 566339 2173843   75567  126017] (base pairs)
1743 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr2.smc.gz: 
[ 105166   64444   59368  102019   76060   51503  312830   57106   75243 1180728   77540   83900  165587   51176
   54535 2087057  226735  122832   78201   51664   76240  278224   51552  329820   70327   51438  104378  104162
   50093   67290] (base pairs)
1748 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr4.smc.gz: 
[  68828  214248   97143  123117  183727 2308624  149480] (base pairs)
1750 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr18.smc.gz: 
[ 380485 4787162  168395  109420   69251  110821] (base pairs)
1751 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr22.smc.gz: 
[10661594   262956   249316    63303   120679   128078   156412   101716    56717  3319884    74758   241256   232363
    87284   110527   773007   331707    86465] (base pairs)
1756 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr7.smc.gz: 
[ 125963 2794730  148828  462957  191186   61408   77551   75582   71727   65832   54501  277624   59545   81656
   80793  259945   51181   57847  217237  206339  105032  173258] (base pairs)
1759 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr14.smc.gz: 
[16092940  2322344    61838   147894   488228   117196   115920   182134   108162    58880   160157] (base pairs)
1763 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr8.smc.gz: 
[ 205802  107605   96993   94036   57914  531482  283097   78525  139504  219969 1992151  183438   62692] (base pairs)
1764 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr20.smc.gz: 
[  60187   65725   73586  216531 1969827   93706   77914   97996  230668   78373  163207  110517] (base pairs)
1767 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr16.smc.gz: 
[ 142540  155889   72252  335341   50086  101205  285553  120073   85996  106357  143844  134501  171023  119473
  122159   59094  258572  125368  245410  662671   66111   60171   56701  324269   56406  112776   76667  767891
 9298063  231515] (base pairs)
1772 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr5.smc.gz: 
[  82199  138112  528707 3044307   82167  327068 1418989   75119   52387   93422  249590] (base pairs)
1776 smcpp.estimation_tools WARNING Long runs of homozygosity in contig KOR.KOREA1K-348.chr6.smc.gz: 
[ 148084   68897   72092   82609 1782765   50771   50288  194609] (base pairs)
Traceback (most recent call last):
  File "/home/diana/anaconda3/bin/smc++", line 8, in <module>
    sys.exit(main())
  File "/home/diana/anaconda3/lib/python3.8/site-packages/smcpp/frontend/console.py", line 28, in main
    cmds[args.command].main(args)
  File "/home/diana/anaconda3/lib/python3.8/site-packages/smcpp/commands/estimate.py", line 47, in main
    analysis = Analysis(args.data, args)
  File "/home/diana/anaconda3/lib/python3.8/site-packages/smcpp/analysis/analysis.py", line 30, in __init__
    m[:] = np.log(NeN0)