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FreeWater in help message #144

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tashrifbillah opened this issue Mar 9, 2022 · 0 comments
Open
2 tasks

FreeWater in help message #144

tashrifbillah opened this issue Mar 9, 2022 · 0 comments
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@tashrifbillah
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tashrifbillah commented Mar 9, 2022

  • Print this message also in help message:

ukftractography/ukf/cli.cc

Lines 100 to 103 in 2c859b3

if (!freeWater && recordFreeWater) {
std::cout << "In Order to use the \"--recordFreeWater\" flag, also the \"--freeWater\" flag must be used!" << std::endl;
return 1 ;
}


  • Change save free water to --recordFreeWater
    --recordFreeWater
     Record output from tensor plus free water model: Save the fraction of
     free water. Attaches field 'FreeWater' to fiber. (value: 0)

   --freeWater
     Adds a term for free water diffusion to the model. The free water
     model is a tensor with all 3 eigenvalues equal to the diffusivity of
     free water (0.003). To output the free water fraction, make sure to
     use the 'save free water' parameter. (value: 0)
@tashrifbillah tashrifbillah self-assigned this Mar 9, 2022
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