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Error on --version #73

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Coppini opened this issue Aug 23, 2021 · 0 comments
Open

Error on --version #73

Coppini opened this issue Aug 23, 2021 · 0 comments

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@Coppini
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Coppini commented Aug 23, 2021

Tried installing with conda, but it still only allows me to install up to v0.4.1.

Tried installing it with the commands given in the README

sudo apt-get install cargo zlib1g-dev xz-utils \
         libclang-dev clang build-essential curl git  # install dependencies 
git clone https://github.com/pjedge/longshot          # clone the Longshot repository
cd longshot                                           # change directory
cargo install --path .                                # install Longshot
export PATH=$PATH:/home/$USER/.cargo/bin              # add cargo binaries to path

As well as trying the Dockerfile I had built earlier, but in both of them, the --version command does not output the version properly:

$ longshot --version

Longshot: variant caller (SNVs) for long-read sequencing data
$ docker run -it longshot
/ # longshot --version

Longshot: variant caller (SNVs) for long-read sequencing data 

I expected to get 0.4.3 from the command, but just got the description of Longshot instead.

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