diff --git a/conf/config.neon b/conf/config.neon
index 0c87d17764..2c89a955d3 100644
--- a/conf/config.neon
+++ b/conf/config.neon
@@ -325,6 +325,7 @@ services:
 		class: PHPStan\File\FileExcluder
 		arguments:
 			analyseExcludes: %excludes_analyse%
+			stubFiles: %stubFiles%
 
 	-
 		class: PHPStan\File\FileFinder
diff --git a/src/Analyser/IgnoredError.php b/src/Analyser/IgnoredError.php
index bc434c5063..f6aad8cb66 100644
--- a/src/Analyser/IgnoredError.php
+++ b/src/Analyser/IgnoredError.php
@@ -54,7 +54,7 @@ public static function shouldIgnore(
 		$ignoredErrorPattern = str_replace([preg_quote('\r\n'), preg_quote('\r')], preg_quote('\n'), $ignoredErrorPattern);
 
 		if ($path !== null) {
-			$fileExcluder = new FileExcluder($fileHelper, [$path]);
+			$fileExcluder = new FileExcluder($fileHelper, [$path], []);
 
 			if (\Nette\Utils\Strings::match($errorMessage, $ignoredErrorPattern) === null) {
 				return false;
diff --git a/src/File/FileExcluder.php b/src/File/FileExcluder.php
index 507e22e843..d13d894ed4 100644
--- a/src/File/FileExcluder.php
+++ b/src/File/FileExcluder.php
@@ -15,10 +15,12 @@ class FileExcluder
 	/**
 	 * @param FileHelper $fileHelper
 	 * @param string[] $analyseExcludes
+	 * @param string[] $stubFiles
 	 */
 	public function __construct(
 		FileHelper $fileHelper,
-		array $analyseExcludes
+		array $analyseExcludes,
+		array $stubFiles
 	)
 	{
 		$this->analyseExcludes = array_map(function (string $exclude) use ($fileHelper): string {
@@ -36,7 +38,7 @@ public function __construct(
 			}
 
 			return $fileHelper->absolutizePath($normalized);
-		}, $analyseExcludes);
+		}, array_merge($analyseExcludes, $stubFiles));
 	}
 
 	public function isExcludedFromAnalysing(string $file): bool
diff --git a/tests/PHPStan/File/FileExcluderTest.php b/tests/PHPStan/File/FileExcluderTest.php
index 51d30e5753..808b36395c 100644
--- a/tests/PHPStan/File/FileExcluderTest.php
+++ b/tests/PHPStan/File/FileExcluderTest.php
@@ -19,7 +19,7 @@ public function testFilesAreExcludedFromAnalysingOnWindows(
 	{
 		$this->skipIfNotOnWindows();
 
-		$fileExcluder = new FileExcluder($this->getFileHelper(), $analyseExcludes);
+		$fileExcluder = new FileExcluder($this->getFileHelper(), $analyseExcludes, []);
 
 		$this->assertSame($isExcluded, $fileExcluder->isExcludedFromAnalysing($filePath));
 	}
@@ -129,7 +129,7 @@ public function testFilesAreExcludedFromAnalysingOnUnix(
 	{
 		$this->skipIfNotOnUnix();
 
-		$fileExcluder = new FileExcluder($this->getFileHelper(), $analyseExcludes);
+		$fileExcluder = new FileExcluder($this->getFileHelper(), $analyseExcludes, []);
 
 		$this->assertSame($isExcluded, $fileExcluder->isExcludedFromAnalysing($filePath));
 	}