diff --git a/CHANGELOG.md b/CHANGELOG.md index 8261dd6d..16f813fe 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,14 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## v0.1.1 - [2024-04-22] + +### Added + +### Changed + +- Switched the resource labels for **parse_fastp**, **select_pointfinder**, **report**, and **parse_kat** from `process_low` to `process_single` as they are all configured to run on the local Nextflow machine. + ## v0.1.0 - [2024-03-22] Initial release of phac-nml/mikrokondo. Mikrokondo currently supports: read trimming and quality control, contamination detection, assembly (isolate, metagenomic or hybrid), annotation, AMR detection and subtyping of genomic sequencing data targeting bacterial or metagenomic data. diff --git a/modules/local/parse_fastp.nf b/modules/local/parse_fastp.nf index b05880e7..145e5bb8 100644 --- a/modules/local/parse_fastp.nf +++ b/modules/local/parse_fastp.nf @@ -3,7 +3,7 @@ import groovy.json.JsonSlurper process PARSE_FASTP{ tag "$meta.id" - label "process_low" + label "process_single" input: tuple val(meta), val(json) diff --git a/modules/local/parse_kat.nf b/modules/local/parse_kat.nf index 50e38112..63e1675c 100644 --- a/modules/local/parse_kat.nf +++ b/modules/local/parse_kat.nf @@ -4,7 +4,7 @@ import groovy.json.JsonSlurper process PARSE_KAT { tag "$meta.id" - label "process_low" + label "process_single" container "${workflow.containerEngine == 'singularity' || workflow.containerEngine == 'apptainer' ? task.ext.containers.get('singularity') : task.ext.containers.get('docker')}" input: diff --git a/modules/local/report.nf b/modules/local/report.nf index 2998afc5..67aec4c1 100644 --- a/modules/local/report.nf +++ b/modules/local/report.nf @@ -11,7 +11,7 @@ import java.nio.file.Paths process REPORT{ tag "Report Generation" - + label "process_single" input: val test_in diff --git a/modules/local/select_pointfinder.nf b/modules/local/select_pointfinder.nf index bcb564cf..ecc54e0b 100644 --- a/modules/local/select_pointfinder.nf +++ b/modules/local/select_pointfinder.nf @@ -2,7 +2,7 @@ process IDENTIFY_POINTDB { tag "$meta.id" - label "process_low" + label "process_single" input: tuple val(meta), val(species) diff --git a/nextflow.config b/nextflow.config index fc55d7b2..23425e17 100644 --- a/nextflow.config +++ b/nextflow.config @@ -1026,7 +1026,7 @@ manifest { description = """Mikrokondo beta""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '0.1.0' + version = '0.1.1' defaultBranch = 'main' doi = '' }