From 8950e86bcc84c68de69abb4912bd03e2f84c75ff Mon Sep 17 00:00:00 2001
From: Peter Cock <p.j.a.cock@googlemail.com>
Date: Mon, 11 Sep 2023 18:32:37 +0100
Subject: [PATCH] Update tests for NCBI BLAST+ 2.14.1

$ tools/ncbi_blast_plus/update_test_files.sh
---
 .../blastn_chimera_vs_three_human_max1.txt    |   2 +-
 test-data/cd00003_and_cd00008.pin             | Bin 104 -> 104 bytes
 ...deltablast_four_human_vs_rhodopsin.tabular |  12 +--
 .../deltablast_four_human_vs_rhodopsin.xml    |  84 +++++++++---------
 ...ablast_four_human_vs_rhodopsin_ext.tabular |  12 +--
 ...deltablast_rhodopsin_vs_four_human.tabular |  12 +--
 test-data/four_human_proteins.fasta.pin       | Bin 120 -> 120 bytes
 test-data/four_human_proteins_taxid.fasta.pin | Bin 120 -> 120 bytes
 test-data/rhodopsin_nucs.fasta.nin            | Bin 164 -> 164 bytes
 test-data/three_human_mRNA.fasta.nin          | Bin 128 -> 128 bytes
 10 files changed, 61 insertions(+), 61 deletions(-)

diff --git a/test-data/blastn_chimera_vs_three_human_max1.txt b/test-data/blastn_chimera_vs_three_human_max1.txt
index d7e32b5a..e84e2574 100644
--- a/test-data/blastn_chimera_vs_three_human_max1.txt
+++ b/test-data/blastn_chimera_vs_three_human_max1.txt
@@ -346,7 +346,7 @@ Effective search space used: 106299490
 
 
   Database: Just 3 human mRNA sequences
-    Posted date:  Sep 9, 2020  11:23 PM
+    Posted date:  Sep 11, 2023  6:30 PM
   Number of letters in database: 10,732
   Number of sequences in database:  3
 
diff --git a/test-data/cd00003_and_cd00008.pin b/test-data/cd00003_and_cd00008.pin
index cf40d55d81b843127d0cd3b2d2ddad1084669e67..333c170b6b42449098ff48e8d2c64a9faffe4301 100644
GIT binary patch
delta 22
dcmd1En4rODXsDxLWME{hpkQWYY%tNx2mn1>1sDJT

delta 22
dcmd1En4rODsiR<IU}T`6U}$J%WIWN#2mn2C1sVVV

diff --git a/test-data/deltablast_four_human_vs_rhodopsin.tabular b/test-data/deltablast_four_human_vs_rhodopsin.tabular
index e64b8979..f592348b 100644
--- a/test-data/deltablast_four_human_vs_rhodopsin.tabular
+++ b/test-data/deltablast_four_human_vs_rhodopsin.tabular
@@ -1,6 +1,6 @@
-P08100	NP_001009242.1	96.552	348	12	0	1	348	1	348	1.35e-145	405
-P08100	P56514.1	84.795	342	51	1	1	341	1	342	7.03e-128	360
-P08100	ADB45242.1	94.817	328	17	0	11	338	1	328	2.24e-129	363
-P08100	ADB45229.1	94.817	328	17	0	11	338	1	328	4.29e-122	344
-P08100	0811197A	93.103	348	23	1	1	348	1	347	7.31e-143	398
-P08100	BAB21486.1	82.164	342	60	1	1	341	1	342	2.14e-127	359
+P08100	NP_001009242.1	96.552	348	12	0	1	348	1	348	4.79e-146	406
+P08100	P56514.1	84.795	342	51	1	1	341	1	342	3.20e-128	361
+P08100	ADB45242.1	94.817	328	17	0	11	338	1	328	7.59e-130	364
+P08100	ADB45229.1	94.817	328	17	0	11	338	1	328	1.25e-122	346
+P08100	0811197A	93.103	348	23	1	1	348	1	347	4.22e-143	398
+P08100	BAB21486.1	82.164	342	60	1	1	341	1	342	9.21e-128	360
diff --git a/test-data/deltablast_four_human_vs_rhodopsin.xml b/test-data/deltablast_four_human_vs_rhodopsin.xml
index 46756bd6..cb431ce0 100644
--- a/test-data/deltablast_four_human_vs_rhodopsin.xml
+++ b/test-data/deltablast_four_human_vs_rhodopsin.xml
@@ -31,7 +31,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>42</Statistics_hsp-len>
       <Statistics_eff-space>657748</Statistics_eff-space>
-      <Statistics_kappa>0.0455430834400978</Statistics_kappa>
+      <Statistics_kappa>0.045541834966265</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -51,7 +51,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>42</Statistics_hsp-len>
       <Statistics_eff-space>657748</Statistics_eff-space>
-      <Statistics_kappa>0.0455430834400978</Statistics_kappa>
+      <Statistics_kappa>0.045541834966265</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -71,7 +71,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>42</Statistics_hsp-len>
       <Statistics_eff-space>657748</Statistics_eff-space>
-      <Statistics_kappa>0.0455430834400978</Statistics_kappa>
+      <Statistics_kappa>0.045541834966265</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -91,7 +91,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>42</Statistics_hsp-len>
       <Statistics_eff-space>657748</Statistics_eff-space>
-      <Statistics_kappa>0.0455430834400978</Statistics_kappa>
+      <Statistics_kappa>0.045541834966265</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -111,7 +111,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>42</Statistics_hsp-len>
       <Statistics_eff-space>657748</Statistics_eff-space>
-      <Statistics_kappa>0.0455430834400978</Statistics_kappa>
+      <Statistics_kappa>0.045541834966265</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -131,7 +131,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>42</Statistics_hsp-len>
       <Statistics_eff-space>657748</Statistics_eff-space>
-      <Statistics_kappa>0.0455430834400978</Statistics_kappa>
+      <Statistics_kappa>0.045541834966265</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -151,7 +151,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>50</Statistics_hsp-len>
       <Statistics_eff-space>1954249</Statistics_eff-space>
-      <Statistics_kappa>0.0406698904620055</Statistics_kappa>
+      <Statistics_kappa>0.0406664556690553</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -171,7 +171,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>50</Statistics_hsp-len>
       <Statistics_eff-space>1954249</Statistics_eff-space>
-      <Statistics_kappa>0.0406698904620055</Statistics_kappa>
+      <Statistics_kappa>0.0406664556690553</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -191,7 +191,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>50</Statistics_hsp-len>
       <Statistics_eff-space>1954249</Statistics_eff-space>
-      <Statistics_kappa>0.0406698904620055</Statistics_kappa>
+      <Statistics_kappa>0.0406664556690553</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -211,7 +211,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>50</Statistics_hsp-len>
       <Statistics_eff-space>1954249</Statistics_eff-space>
-      <Statistics_kappa>0.0406698904620055</Statistics_kappa>
+      <Statistics_kappa>0.0406664556690553</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -231,7 +231,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>50</Statistics_hsp-len>
       <Statistics_eff-space>1954249</Statistics_eff-space>
-      <Statistics_kappa>0.0406698904620055</Statistics_kappa>
+      <Statistics_kappa>0.0406664556690553</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -251,7 +251,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>50</Statistics_hsp-len>
       <Statistics_eff-space>1954249</Statistics_eff-space>
-      <Statistics_kappa>0.0406698904620055</Statistics_kappa>
+      <Statistics_kappa>0.0406664556690553</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -271,7 +271,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>51</Statistics_hsp-len>
       <Statistics_eff-space>2333243</Statistics_eff-space>
-      <Statistics_kappa>0.0434921973217113</Statistics_kappa>
+      <Statistics_kappa>0.0437261208412026</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -291,7 +291,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>51</Statistics_hsp-len>
       <Statistics_eff-space>2333243</Statistics_eff-space>
-      <Statistics_kappa>0.0434921973217113</Statistics_kappa>
+      <Statistics_kappa>0.0437261208412026</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -311,7 +311,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>51</Statistics_hsp-len>
       <Statistics_eff-space>2333243</Statistics_eff-space>
-      <Statistics_kappa>0.0434921973217113</Statistics_kappa>
+      <Statistics_kappa>0.0437261208412026</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -331,7 +331,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>51</Statistics_hsp-len>
       <Statistics_eff-space>2333243</Statistics_eff-space>
-      <Statistics_kappa>0.0434921973217113</Statistics_kappa>
+      <Statistics_kappa>0.0437261208412026</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -351,7 +351,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>51</Statistics_hsp-len>
       <Statistics_eff-space>2333243</Statistics_eff-space>
-      <Statistics_kappa>0.0434921973217113</Statistics_kappa>
+      <Statistics_kappa>0.0437261208412026</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -371,7 +371,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>51</Statistics_hsp-len>
       <Statistics_eff-space>2333243</Statistics_eff-space>
-      <Statistics_kappa>0.0434921973217113</Statistics_kappa>
+      <Statistics_kappa>0.0437261208412026</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -393,9 +393,9 @@
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>405.168</Hsp_bit-score>
-      <Hsp_score>1041</Hsp_score>
-      <Hsp_evalue>1.35477e-145</Hsp_evalue>
+      <Hsp_bit-score>406.31</Hsp_bit-score>
+      <Hsp_score>1044</Hsp_score>
+      <Hsp_evalue>4.78937e-146</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>348</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
@@ -419,7 +419,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>41</Statistics_hsp-len>
       <Statistics_eff-space>556591</Statistics_eff-space>
-      <Statistics_kappa>0.0555169114045818</Statistics_kappa>
+      <Statistics_kappa>0.0558537300068921</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -440,9 +440,9 @@
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>360.485</Hsp_bit-score>
-      <Hsp_score>925</Hsp_score>
-      <Hsp_evalue>7.02689e-128</Hsp_evalue>
+      <Hsp_bit-score>361.242</Hsp_bit-score>
+      <Hsp_score>927</Hsp_score>
+      <Hsp_evalue>3.19834e-128</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>341</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
@@ -466,7 +466,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>41</Statistics_hsp-len>
       <Statistics_eff-space>556591</Statistics_eff-space>
-      <Statistics_kappa>0.0555169114045818</Statistics_kappa>
+      <Statistics_kappa>0.0558537300068921</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -487,9 +487,9 @@
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>363.181</Hsp_bit-score>
-      <Hsp_score>932</Hsp_score>
-      <Hsp_evalue>2.24156e-129</Hsp_evalue>
+      <Hsp_bit-score>364.709</Hsp_bit-score>
+      <Hsp_score>936</Hsp_score>
+      <Hsp_evalue>7.59412e-130</Hsp_evalue>
       <Hsp_query-from>11</Hsp_query-from>
       <Hsp_query-to>338</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
@@ -513,7 +513,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>41</Statistics_hsp-len>
       <Statistics_eff-space>556591</Statistics_eff-space>
-      <Statistics_kappa>0.0555169114045818</Statistics_kappa>
+      <Statistics_kappa>0.0558537300068921</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -534,9 +534,9 @@
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>344.691</Hsp_bit-score>
-      <Hsp_score>884</Hsp_score>
-      <Hsp_evalue>4.29181e-122</Hsp_evalue>
+      <Hsp_bit-score>346.219</Hsp_bit-score>
+      <Hsp_score>888</Hsp_score>
+      <Hsp_evalue>1.24922e-122</Hsp_evalue>
       <Hsp_query-from>11</Hsp_query-from>
       <Hsp_query-to>338</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
@@ -560,7 +560,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>41</Statistics_hsp-len>
       <Statistics_eff-space>556591</Statistics_eff-space>
-      <Statistics_kappa>0.0555169114045818</Statistics_kappa>
+      <Statistics_kappa>0.0558537300068921</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -581,9 +581,9 @@
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>398.234</Hsp_bit-score>
-      <Hsp_score>1023</Hsp_score>
-      <Hsp_evalue>7.30696e-143</Hsp_evalue>
+      <Hsp_bit-score>398.992</Hsp_bit-score>
+      <Hsp_score>1025</Hsp_score>
+      <Hsp_evalue>4.2239e-143</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>348</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
@@ -607,7 +607,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>41</Statistics_hsp-len>
       <Statistics_eff-space>556591</Statistics_eff-space>
-      <Statistics_kappa>0.0555169114045818</Statistics_kappa>
+      <Statistics_kappa>0.0558537300068921</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
@@ -628,9 +628,9 @@
   <Hit_hsps>
     <Hsp>
       <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>359.329</Hsp_bit-score>
-      <Hsp_score>922</Hsp_score>
-      <Hsp_evalue>2.13718e-127</Hsp_evalue>
+      <Hsp_bit-score>360.086</Hsp_bit-score>
+      <Hsp_score>924</Hsp_score>
+      <Hsp_evalue>9.21171e-128</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>341</Hsp_query-to>
       <Hsp_hit-from>1</Hsp_hit-from>
@@ -654,7 +654,7 @@
       <Statistics_db-len>0</Statistics_db-len>
       <Statistics_hsp-len>41</Statistics_hsp-len>
       <Statistics_eff-space>556591</Statistics_eff-space>
-      <Statistics_kappa>0.0555169114045818</Statistics_kappa>
+      <Statistics_kappa>0.0558537300068921</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
     </Statistics>
diff --git a/test-data/deltablast_four_human_vs_rhodopsin_ext.tabular b/test-data/deltablast_four_human_vs_rhodopsin_ext.tabular
index 1640a156..43643044 100644
--- a/test-data/deltablast_four_human_vs_rhodopsin_ext.tabular
+++ b/test-data/deltablast_four_human_vs_rhodopsin_ext.tabular
@@ -1,6 +1,6 @@
-P08100	NP_001009242.1	96.552	348	12	0	1	348	1	348	1.35e-145	405	gi|57163783|ref|NP_001009242.1|	1041	336	343	0	98.56	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	348	N/A
-P08100	P56514.1	84.795	342	51	1	1	341	1	342	7.03e-128	360	gi|3024260|sp|P56514.1|OPSD_BUFBU	925	290	322	1	94.15	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	354	N/A
-P08100	ADB45242.1	94.817	328	17	0	11	338	1	328	2.24e-129	363	gi|283855846|gb|ADB45242.1|	932	311	321	0	97.87	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
-P08100	ADB45229.1	94.817	328	17	0	11	338	1	328	4.29e-122	344	gi|283855823|gb|ADB45229.1|	884	311	323	0	98.48	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
-P08100	0811197A	93.103	348	23	1	1	348	1	347	7.31e-143	398	gi|223523|prf||0811197A	1023	324	336	1	96.55	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDY-TPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	347	N/A
-P08100	BAB21486.1	82.164	342	60	1	1	341	1	342	2.14e-127	359	gi|12583665|dbj|BAB21486.1|	922	281	314	1	91.81	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	354	N/A
+P08100	NP_001009242.1	96.552	348	12	0	1	348	1	348	4.79e-146	406	gi|57163783|ref|NP_001009242.1|	1044	336	343	0	98.56	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	348	N/A
+P08100	P56514.1	84.795	342	51	1	1	341	1	342	3.20e-128	361	gi|3024260|sp|P56514.1|OPSD_BUFBU	927	290	322	1	94.15	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	354	N/A
+P08100	ADB45242.1	94.817	328	17	0	11	338	1	328	7.59e-130	364	gi|283855846|gb|ADB45242.1|	936	311	321	0	97.87	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
+P08100	ADB45229.1	94.817	328	17	0	11	338	1	328	1.25e-122	346	gi|283855823|gb|ADB45229.1|	888	311	323	0	98.48	1	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS	348	328	N/A
+P08100	0811197A	93.103	348	23	1	1	348	1	347	4.22e-143	398	gi|223523|prf||0811197A	1025	324	336	1	96.55	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDY-TPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	347	N/A
+P08100	BAB21486.1	82.164	342	60	1	1	341	1	342	9.21e-128	360	gi|12583665|dbj|BAB21486.1|	924	281	314	1	91.81	1	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	354	N/A
diff --git a/test-data/deltablast_rhodopsin_vs_four_human.tabular b/test-data/deltablast_rhodopsin_vs_four_human.tabular
index 8652361f..9a6218da 100644
--- a/test-data/deltablast_rhodopsin_vs_four_human.tabular
+++ b/test-data/deltablast_rhodopsin_vs_four_human.tabular
@@ -1,6 +1,6 @@
-gi|57163783|ref|NP_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	348	1	348	1.15e-137	385
-gi|3024260|sp|P56514.1|OPSD_BUFBU	sp|P08100|OPSD_HUMAN	83.333	354	53	2	1	354	1	348	1.59e-128	362
-gi|283855846|gb|ADB45242.1|	sp|P08100|OPSD_HUMAN	94.817	328	17	0	1	328	11	338	2.77e-120	340
-gi|283855823|gb|ADB45229.1|	sp|P08100|OPSD_HUMAN	94.817	328	17	0	1	328	11	338	1.62e-120	341
-gi|223523|prf||0811197A	sp|P08100|OPSD_HUMAN	92.816	348	24	1	1	347	1	348	2.52e-133	374
-gi|12583665|dbj|BAB21486.1|	sp|P08100|OPSD_HUMAN	81.089	349	65	1	1	349	1	348	1.13e-126	358
+gi|57163783|ref|NP_001009242.1|	sp|P08100|OPSD_HUMAN	96.552	348	12	0	1	348	1	348	1.71e-137	385
+gi|3024260|sp|P56514.1|OPSD_BUFBU	sp|P08100|OPSD_HUMAN	83.333	354	53	2	1	354	1	348	3.53e-130	367
+gi|283855846|gb|ADB45242.1|	sp|P08100|OPSD_HUMAN	94.817	328	17	0	1	328	11	338	7.52e-121	341
+gi|283855823|gb|ADB45229.1|	sp|P08100|OPSD_HUMAN	94.817	328	17	0	1	328	11	338	2.06e-121	343
+gi|223523|prf||0811197A	sp|P08100|OPSD_HUMAN	92.816	348	24	1	1	347	1	348	1.05e-134	378
+gi|12583665|dbj|BAB21486.1|	sp|P08100|OPSD_HUMAN	81.089	349	65	1	1	349	1	348	5.41e-127	358
diff --git a/test-data/four_human_proteins.fasta.pin b/test-data/four_human_proteins.fasta.pin
index 24e5330f9c8a05072ea20daab9e4139d296f5c01..6e5ade7134a49f5c92b79eb39360855122845851 100644
GIT binary patch
delta 22
dcmb=Zn4rmLXsDxLWME{hpkQWYY%tN>5dc6h1xWw^

delta 22
dcmb=Zn4rmLsiR<IU}T`6U}$J%WIWN_5dc6%1xo+`

diff --git a/test-data/four_human_proteins_taxid.fasta.pin b/test-data/four_human_proteins_taxid.fasta.pin
index 9da166093e5184a9ee59b612de945165b00762c8..22a1f106240ee1b1258d77163538bf7d0dcbff42 100644
GIT binary patch
delta 22
dcmb=Zn4rmLXsDxLWME{hpkQWYY%tN>5dc6h1xWw^

delta 22
dcmb=Zn4rmLsiR<IU}T`6U}$J%WIWN_5dc6%1xo+`

diff --git a/test-data/rhodopsin_nucs.fasta.nin b/test-data/rhodopsin_nucs.fasta.nin
index c8857b2657af53da3bc5b6f041dafc22085b095e..98105310e04b098dcc6c362813d1ba4af09f368c 100644
GIT binary patch
delta 24
fcmZ3&xP)<nCZD09j)IYak+Fh;nU%4@MDtt#N!bO@

delta 24
fcmZ3&xP)<nCZDB_f{}rdfr5gep_P&GMDtt#N$&;G

diff --git a/test-data/three_human_mRNA.fasta.nin b/test-data/three_human_mRNA.fasta.nin
index 280365f430c627fbeb6c175c3a4a92392d971987..c6a8008bc1f2b632193e4f02a817ab6d033f39df 100644
GIT binary patch
delta 24
fcmZo*Y+#(A&u3_;qhMrUWUQcIW@T(J(bgFNL$w8I

delta 24
fcmZo*Y+#(A&u6KlU}RuqprBxAXk}zP(bgFNL(2tg