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atom_energy.F
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!--------------------------------------------------------------------------------------------------!
! CP2K: A general program to perform molecular dynamics simulations !
! Copyright (C) 2000 - 2020 CP2K developers group !
!--------------------------------------------------------------------------------------------------!
MODULE atom_energy
USE atom_admm_methods, ONLY: atom_admm
USE atom_electronic_structure, ONLY: calculate_atom
USE atom_fit, ONLY: atom_fit_density,&
atom_fit_kgpot
USE atom_grb, ONLY: atom_grb_construction
USE atom_operators, ONLY: atom_int_release,&
atom_int_setup,&
atom_ppint_release,&
atom_ppint_setup,&
atom_relint_release,&
atom_relint_setup
USE atom_output, ONLY: atom_print_basis,&
atom_print_info,&
atom_print_method,&
atom_print_orbitals,&
atom_print_potential,&
atom_write_pseudo_param
USE atom_sgp, ONLY: atom_sgp_construction
USE atom_types, ONLY: &
atom_basis_type, atom_gthpot_type, atom_integrals, atom_optimization_type, atom_orbitals, &
atom_p_type, atom_potential_type, atom_state, atom_type, create_atom_orbs, &
create_atom_type, gth_pseudo, init_atom_basis, init_atom_potential, lmat, &
read_atom_opt_section, release_atom_basis, release_atom_potential, release_atom_type, &
set_atom
USE atom_utils, ONLY: &
atom_completeness, atom_condnumber, atom_consistent_method, atom_core_density, &
atom_density, atom_local_potential, atom_read_external_density, atom_read_external_vxc, &
atom_set_occupation, atom_write_zmp_restart, get_maxl_occ, get_maxn_occ
USE atom_xc, ONLY: calculate_atom_ext_vxc,&
calculate_atom_zmp
USE cp_log_handling, ONLY: cp_get_default_logger,&
cp_logger_type
USE cp_output_handling, ONLY: cp_print_key_finished_output,&
cp_print_key_unit_nr
USE input_constants, ONLY: do_analytic
USE input_section_types, ONLY: section_vals_get,&
section_vals_get_subs_vals,&
section_vals_type,&
section_vals_val_get
USE kinds, ONLY: default_string_length,&
dp
USE mathconstants, ONLY: dfac,&
gamma1,&
pi
USE periodic_table, ONLY: nelem,&
ptable
USE physcon, ONLY: bohr
#include "./base/base_uses.f90"
IMPLICIT NONE
PRIVATE
PUBLIC :: atom_energy_opt
CHARACTER(len=*), PARAMETER, PRIVATE :: moduleN = 'atom_energy'
CONTAINS
! **************************************************************************************************
!> \brief Compute the atomic energy.
!> \param atom_section ATOM input section
!> \par History
!> * 11.2016 geometrical response basis set [Juerg Hutter]
!> * 07.2016 ADMM analysis [Juerg Hutter]
!> * 02.2014 non-additive kinetic energy term [Juerg Hutter]
!> * 11.2013 Zhao, Morrison, and Parr (ZMP) potential [Daniele Varsano]
!> * 02.2010 unrestricted KS and HF methods [Juerg Hutter]
!> * 05.2009 electronic density fit [Juerg Hutter]
!> * 04.2009 refactored and renamed to atom_energy_opt() [Juerg Hutter]
!> * 08.2008 created as atom_energy() [Juerg Hutter]
! **************************************************************************************************
SUBROUTINE atom_energy_opt(atom_section)
TYPE(section_vals_type), POINTER :: atom_section
CHARACTER(len=*), PARAMETER :: routineN = 'atom_energy_opt', &
routineP = moduleN//':'//routineN
CHARACTER(LEN=2) :: elem
CHARACTER(LEN=default_string_length) :: filename
CHARACTER(LEN=default_string_length), &
DIMENSION(:), POINTER :: tmpstringlist
INTEGER :: do_eric, do_erie, handle, i, im, in, iw, k, maxl, mb, method, mo, n_meth, n_rep, &
nder, nr_gh, num_gau, num_gto, num_pol, reltyp, zcore, zval, zz
INTEGER, DIMENSION(0:lmat) :: maxn
INTEGER, DIMENSION(:), POINTER :: cn
LOGICAL :: dm, do_gh, do_zmp, doread, eri_c, eri_e, &
had_ae, had_pp, lcomp, lcond, pp_calc, &
read_vxc
REAL(KIND=dp) :: crad, delta, lambda
REAL(KIND=dp), ALLOCATABLE, DIMENSION(:) :: ext_density, ext_vxc
REAL(KIND=dp), DIMENSION(0:lmat, 10) :: pocc
TYPE(atom_basis_type), POINTER :: ae_basis, pp_basis
TYPE(atom_integrals), POINTER :: ae_int, pp_int
TYPE(atom_optimization_type) :: optimization
TYPE(atom_orbitals), POINTER :: orbitals
TYPE(atom_p_type), DIMENSION(:, :), POINTER :: atom_info
TYPE(atom_potential_type), POINTER :: ae_pot, p_pot
TYPE(atom_state), POINTER :: state
TYPE(cp_logger_type), POINTER :: logger
TYPE(section_vals_type), POINTER :: admm_section, basis_section, external_vxc_section, &
method_section, opt_section, potential_section, powell_section, sgp_section, xc_section, &
zmp_restart_section, zmp_section
CALL timeset(routineN, handle)
! What atom do we calculate
CALL section_vals_val_get(atom_section, "ATOMIC_NUMBER", i_val=zval)
CALL section_vals_val_get(atom_section, "ELEMENT", c_val=elem)
zz = 0
DO i = 1, nelem
IF (ptable(i)%symbol == elem) THEN
zz = i
EXIT
END IF
END DO
IF (zz /= 1) zval = zz
! read and set up inofrmation on the basis sets
ALLOCATE (ae_basis, pp_basis)
basis_section => section_vals_get_subs_vals(atom_section, "AE_BASIS")
NULLIFY (ae_basis%grid)
CALL init_atom_basis(ae_basis, basis_section, zval, "AE")
NULLIFY (pp_basis%grid)
basis_section => section_vals_get_subs_vals(atom_section, "PP_BASIS")
CALL init_atom_basis(pp_basis, basis_section, zval, "PP")
! print general and basis set information
logger => cp_get_default_logger()
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%PROGRAM_BANNER", extension=".log")
IF (iw > 0) CALL atom_print_info(zval, "Atomic Energy Calculation", iw)
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%PROGRAM_BANNER")
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%BASIS_SET", extension=".log")
IF (iw > 0) THEN
CALL atom_print_basis(ae_basis, iw, " All Electron Basis")
CALL atom_print_basis(pp_basis, iw, " Pseudopotential Basis")
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%BASIS_SET")
! read and setup information on the pseudopotential
NULLIFY (potential_section)
potential_section => section_vals_get_subs_vals(atom_section, "POTENTIAL")
ALLOCATE (ae_pot, p_pot)
CALL init_atom_potential(p_pot, potential_section, zval)
CALL init_atom_potential(ae_pot, potential_section, -1)
! if the ERI's are calculated analytically, we have to precalculate them
eri_c = .FALSE.
CALL section_vals_val_get(atom_section, "COULOMB_INTEGRALS", i_val=do_eric)
IF (do_eric == do_analytic) eri_c = .TRUE.
eri_e = .FALSE.
CALL section_vals_val_get(atom_section, "EXCHANGE_INTEGRALS", i_val=do_erie)
IF (do_erie == do_analytic) eri_e = .TRUE.
CALL section_vals_val_get(atom_section, "USE_GAUSS_HERMITE", l_val=do_gh)
CALL section_vals_val_get(atom_section, "GRID_POINTS_GH", i_val=nr_gh)
! information on the states to be calculated
CALL section_vals_val_get(atom_section, "MAX_ANGULAR_MOMENTUM", i_val=maxl)
maxn = 0
CALL section_vals_val_get(atom_section, "CALCULATE_STATES", i_vals=cn)
DO in = 1, MIN(SIZE(cn), 4)
maxn(in - 1) = cn(in)
END DO
DO in = 0, lmat
maxn(in) = MIN(maxn(in), ae_basis%nbas(in))
maxn(in) = MIN(maxn(in), pp_basis%nbas(in))
END DO
! read optimization section
opt_section => section_vals_get_subs_vals(atom_section, "OPTIMIZATION")
CALL read_atom_opt_section(optimization, opt_section)
had_ae = .FALSE.
had_pp = .FALSE.
! Check for the total number of electron configurations to be calculated
CALL section_vals_val_get(atom_section, "ELECTRON_CONFIGURATION", n_rep_val=n_rep)
! Check for the total number of method types to be calculated
method_section => section_vals_get_subs_vals(atom_section, "METHOD")
CALL section_vals_get(method_section, n_repetition=n_meth)
! integrals
ALLOCATE (ae_int, pp_int)
ALLOCATE (atom_info(n_rep, n_meth))
DO in = 1, n_rep
DO im = 1, n_meth
NULLIFY (atom_info(in, im)%atom)
CALL create_atom_type(atom_info(in, im)%atom)
atom_info(in, im)%atom%optimization = optimization
atom_info(in, im)%atom%z = zval
xc_section => section_vals_get_subs_vals(method_section, "XC", i_rep_section=im)
atom_info(in, im)%atom%xc_section => xc_section
! ZMP Reading input sections if they are found initialize everything
do_zmp = .FALSE.
doread = .FALSE.
read_vxc = .FALSE.
zmp_section => section_vals_get_subs_vals(method_section, "ZMP")
CALL section_vals_get(zmp_section, explicit=do_zmp)
atom_info(in, im)%atom%do_zmp = do_zmp
CALL section_vals_val_get(zmp_section, "FILE_DENSITY", c_val=filename)
atom_info(in, im)%atom%ext_file = filename
CALL section_vals_val_get(zmp_section, "GRID_TOL", &
r_val=atom_info(in, im)%atom%zmpgrid_tol)
CALL section_vals_val_get(zmp_section, "LAMBDA", r_val=lambda)
atom_info(in, im)%atom%lambda = lambda
CALL section_vals_val_get(zmp_section, "DM", l_val=dm)
atom_info(in, im)%atom%dm = dm
zmp_restart_section => section_vals_get_subs_vals(zmp_section, "RESTART")
CALL section_vals_get(zmp_restart_section, explicit=doread)
atom_info(in, im)%atom%doread = doread
CALL section_vals_val_get(zmp_restart_section, "FILE_RESTART", c_val=filename)
atom_info(in, im)%atom%zmp_restart_file = filename
! ZMP Reading external vxc section, if found initialize
external_vxc_section => section_vals_get_subs_vals(method_section, "EXTERNAL_VXC")
CALL section_vals_get(external_vxc_section, explicit=read_vxc)
atom_info(in, im)%atom%read_vxc = read_vxc
CALL section_vals_val_get(external_vxc_section, "FILE_VXC", c_val=filename)
atom_info(in, im)%atom%ext_vxc_file = filename
CALL section_vals_val_get(external_vxc_section, "GRID_TOL", &
r_val=atom_info(in, im)%atom%zmpvxcgrid_tol)
ALLOCATE (state)
! get the electronic configuration
CALL section_vals_val_get(atom_section, "ELECTRON_CONFIGURATION", i_rep_val=in, &
c_vals=tmpstringlist)
! set occupations
CALL atom_set_occupation(tmpstringlist, state%occ, state%occupation, state%multiplicity)
state%maxl_occ = get_maxl_occ(state%occ)
state%maxn_occ = get_maxn_occ(state%occ)
! set number of states to be calculated
state%maxl_calc = MAX(maxl, state%maxl_occ)
state%maxl_calc = MIN(lmat, state%maxl_calc)
state%maxn_calc = 0
DO k = 0, state%maxl_calc
state%maxn_calc(k) = MAX(maxn(k), state%maxn_occ(k))
END DO
! is there a pseudo potential
pp_calc = ANY(INDEX(tmpstringlist(1:), "CORE") /= 0)
IF (pp_calc) THEN
! get and set the core occupations
CALL section_vals_val_get(atom_section, "CORE", c_vals=tmpstringlist)
CALL atom_set_occupation(tmpstringlist, state%core, pocc)
zcore = zval - NINT(SUM(state%core))
CALL set_atom(atom_info(in, im)%atom, zcore=zcore, pp_calc=.TRUE.)
ELSE
state%core = 0._dp
CALL set_atom(atom_info(in, im)%atom, zcore=zval, pp_calc=.FALSE.)
END IF
CALL section_vals_val_get(method_section, "METHOD_TYPE", i_val=method, i_rep_section=im)
CALL section_vals_val_get(method_section, "RELATIVISTIC", i_val=reltyp, i_rep_section=im)
CALL set_atom(atom_info(in, im)%atom, method_type=method, relativistic=reltyp)
IF (atom_consistent_method(method, state%multiplicity)) THEN
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%METHOD_INFO", extension=".log")
CALL atom_print_method(atom_info(in, im)%atom, iw)
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%METHOD_INFO")
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%POTENTIAL", extension=".log")
IF (pp_calc) THEN
IF (iw > 0) CALL atom_print_potential(p_pot, iw)
ELSE
IF (iw > 0) CALL atom_print_potential(ae_pot, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%POTENTIAL")
END IF
! calculate integrals
IF (pp_calc) THEN
! general integrals
CALL atom_int_setup(pp_int, pp_basis, &
potential=p_pot, eri_coulomb=eri_c, eri_exchange=eri_e)
! potential
CALL atom_ppint_setup(pp_int, pp_basis, potential=p_pot)
!
NULLIFY (pp_int%tzora, pp_int%hdkh)
!
CALL set_atom(atom_info(in, im)%atom, basis=pp_basis, integrals=pp_int, potential=p_pot)
state%maxn_calc(:) = MIN(state%maxn_calc(:), pp_basis%nbas(:))
CPASSERT(ALL(state%maxn_calc(:) >= state%maxn_occ))
had_pp = .TRUE.
ELSE
! general integrals
CALL atom_int_setup(ae_int, ae_basis, potential=ae_pot, &
eri_coulomb=eri_c, eri_exchange=eri_e)
! potential
CALL atom_ppint_setup(ae_int, ae_basis, potential=ae_pot)
! relativistic correction terms
CALL atom_relint_setup(ae_int, ae_basis, reltyp, zcore=REAL(zval, dp))
!
CALL set_atom(atom_info(in, im)%atom, basis=ae_basis, integrals=ae_int, potential=ae_pot)
state%maxn_calc(:) = MIN(state%maxn_calc(:), ae_basis%nbas(:))
CPASSERT(ALL(state%maxn_calc(:) >= state%maxn_occ))
had_ae = .TRUE.
END IF
CALL set_atom(atom_info(in, im)%atom, state=state)
CALL set_atom(atom_info(in, im)%atom, coulomb_integral_type=do_eric, &
exchange_integral_type=do_erie)
atom_info(in, im)%atom%hfx_pot%do_gh = do_gh
atom_info(in, im)%atom%hfx_pot%nr_gh = nr_gh
NULLIFY (orbitals)
mo = MAXVAL(state%maxn_calc)
mb = MAXVAL(atom_info(in, im)%atom%basis%nbas)
CALL create_atom_orbs(orbitals, mb, mo)
CALL set_atom(atom_info(in, im)%atom, orbitals=orbitals)
IF (atom_consistent_method(method, state%multiplicity)) THEN
!Calculate the electronic structure
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%SCF_INFO", extension=".log")
CALL calculate_atom(atom_info(in, im)%atom, iw)
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%SCF_INFO")
! ZMP If we have the external density do zmp
IF (atom_info(in, im)%atom%do_zmp) THEN
CALL atom_write_zmp_restart(atom_info(in, im)%atom)
ALLOCATE (ext_density(atom_info(in, im)%atom%basis%grid%nr))
ext_density = 0._dp
CALL atom_read_external_density(ext_density, atom_info(in, im)%atom, iw)
CALL calculate_atom_zmp(ext_density=ext_density, &
atom=atom_info(in, im)%atom, &
lprint=.TRUE.)
DEALLOCATE (ext_density)
ENDIF
! ZMP If we have the external v_xc calculate KS quantities
IF (atom_info(in, im)%atom%read_vxc) THEN
ALLOCATE (ext_vxc(atom_info(in, im)%atom%basis%grid%nr))
ext_vxc = 0._dp
CALL atom_read_external_vxc(ext_vxc, atom_info(in, im)%atom, iw)
CALL calculate_atom_ext_vxc(vxc=ext_vxc, &
atom=atom_info(in, im)%atom, &
lprint=.TRUE.)
DEALLOCATE (ext_vxc)
ENDIF
! Print out the orbitals if requested
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%ORBITALS", extension=".log")
IF (iw > 0) THEN
CALL atom_print_orbitals(atom_info(in, im)%atom, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%ORBITALS")
! perform a fit of the total electronic density
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%FIT_DENSITY", extension=".log")
IF (iw > 0) THEN
CALL section_vals_val_get(atom_section, "PRINT%FIT_DENSITY%NUM_GTO", i_val=num_gto)
powell_section => section_vals_get_subs_vals(atom_section, "POWELL")
CALL atom_fit_density(atom_info(in, im)%atom, num_gto, 0, iw, powell_section=powell_section)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%FIT_DENSITY")
! Optimize a local potential for the non-additive kinetic energy term in KG
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%FIT_KGPOT", extension=".log")
IF (iw > 0) THEN
CALL section_vals_val_get(atom_section, "PRINT%FIT_KGPOT%NUM_GAUSSIAN", i_val=num_gau)
CALL section_vals_val_get(atom_section, "PRINT%FIT_KGPOT%NUM_POLYNOM", i_val=num_pol)
powell_section => section_vals_get_subs_vals(atom_section, "POWELL")
CALL atom_fit_kgpot(atom_info(in, im)%atom, num_gau, num_pol, iw, powell_section=powell_section)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%FIT_KGPOT")
! generate a response basis
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%RESPONSE_BASIS", extension=".log")
IF (iw > 0) THEN
CALL section_vals_val_get(atom_section, "PRINT%RESPONSE_BASIS%DELTA_CHARGE", r_val=delta)
CALL section_vals_val_get(atom_section, "PRINT%RESPONSE_BASIS%DERIVATIVES", i_val=nder)
CALL atom_response_basis(atom_info(in, im)%atom, delta, nder, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%RESPONSE_BASIS")
! generate a UPF file
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%UPF_FILE", extension=".upf", &
file_position="REWIND")
IF (iw > 0) THEN
CALL atom_write_upf(atom_info(in, im)%atom, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%UPF_FILE")
END IF
END DO
END DO
! generate a geometrical response basis (GRB)
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%GEOMETRICAL_RESPONSE_BASIS", extension=".log")
IF (iw > 0) THEN
CALL atom_grb_construction(atom_info, atom_section, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%GEOMETRICAL_RESPONSE_BASIS")
! Analyze basis sets
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%ANALYZE_BASIS", extension=".log")
IF (iw > 0) THEN
CALL section_vals_val_get(atom_section, "PRINT%ANALYZE_BASIS%OVERLAP_CONDITION_NUMBER", l_val=lcond)
CALL section_vals_val_get(atom_section, "PRINT%ANALYZE_BASIS%COMPLETENESS", l_val=lcomp)
crad = ptable(zval)%covalent_radius*bohr
IF (had_ae) THEN
IF (lcond) CALL atom_condnumber(ae_basis, crad, iw)
IF (lcomp) CALL atom_completeness(ae_basis, zval, iw)
END IF
IF (had_pp) THEN
IF (lcond) CALL atom_condnumber(pp_basis, crad, iw)
IF (lcomp) CALL atom_completeness(pp_basis, zval, iw)
END IF
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%ANALYZE_BASIS")
! Analyse ADMM approximation
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%ADMM", extension=".log")
admm_section => section_vals_get_subs_vals(atom_section, "PRINT%ADMM")
IF (iw > 0) THEN
CALL atom_admm(atom_info, admm_section, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%ADMM")
! Generate a separable form of the pseudopotential using Gaussian functions
iw = cp_print_key_unit_nr(logger, atom_section, "PRINT%SEPARABLE_GAUSSIAN_PSEUDO", extension=".log")
sgp_section => section_vals_get_subs_vals(atom_section, "PRINT%SEPARABLE_GAUSSIAN_PSEUDO")
IF (iw > 0) THEN
CALL atom_sgp_construction(atom_info, sgp_section, iw)
END IF
CALL cp_print_key_finished_output(iw, logger, atom_section, "PRINT%SEPARABLE_GAUSSIAN_PSEUDO")
! clean up
IF (had_ae) THEN
CALL atom_int_release(ae_int)
CALL atom_ppint_release(ae_int)
CALL atom_relint_release(ae_int)
END IF
IF (had_pp) THEN
CALL atom_int_release(pp_int)
CALL atom_ppint_release(pp_int)
CALL atom_relint_release(pp_int)
END IF
CALL release_atom_basis(ae_basis)
CALL release_atom_basis(pp_basis)
CALL release_atom_potential(p_pot)
CALL release_atom_potential(ae_pot)
DO in = 1, n_rep
DO im = 1, n_meth
CALL release_atom_type(atom_info(in, im)%atom)
END DO
END DO
DEALLOCATE (atom_info)
DEALLOCATE (ae_pot, p_pot, ae_basis, pp_basis, ae_int, pp_int)
CALL timestop(handle)
END SUBROUTINE atom_energy_opt
! **************************************************************************************************
!> \brief Calculate response basis contraction coefficients.
!> \param atom information about the atomic kind
!> \param delta variation of charge used in finite difference derivative calculation
!> \param nder number of wavefunction derivatives to calculate
!> \param iw output file unit
!> \par History
!> * 10.2011 Gram-Schmidt orthogonalization [Joost VandeVondele]
!> * 05.2009 created [Juerg Hutter]
! **************************************************************************************************
SUBROUTINE atom_response_basis(atom, delta, nder, iw)
TYPE(atom_type), POINTER :: atom
REAL(KIND=dp), INTENT(IN) :: delta
INTEGER, INTENT(IN) :: nder, iw
CHARACTER(len=*), PARAMETER :: routineN = 'atom_response_basis', &
routineP = moduleN//':'//routineN
INTEGER :: i, ider, j, k, l, lhomo, m, n, nhomo, &
s1, s2
REAL(KIND=dp) :: dene, emax, expzet, fhomo, o, prefac, &
zeta
REAL(KIND=dp), ALLOCATABLE, DIMENSION(:, :) :: amat
REAL(KIND=dp), ALLOCATABLE, DIMENSION(:, :, :) :: rbasis
REAL(KIND=dp), ALLOCATABLE, DIMENSION(:, :, :, :) :: wfn
REAL(KIND=dp), DIMENSION(:, :, :), POINTER :: ovlp
TYPE(atom_state), POINTER :: state
WRITE (iw, '(/," ",79("*"),/,T30,A,A/," ",79("*"))') "RESPONSE BASIS for ", ptable(atom%z)%symbol
state => atom%state
ovlp => atom%integrals%ovlp
! find HOMO
lhomo = -1
nhomo = -1
emax = -HUGE(1._dp)
DO l = 0, state%maxl_occ
DO i = 1, state%maxn_occ(l)
IF (atom%orbitals%ener(i, l) > emax) THEN
lhomo = l
nhomo = i
emax = atom%orbitals%ener(i, l)
fhomo = state%occupation(l, i)
END IF
END DO
END DO
s1 = SIZE(atom%orbitals%wfn, 1)
s2 = SIZE(atom%orbitals%wfn, 2)
ALLOCATE (wfn(s1, s2, 0:lmat, -nder:nder))
s2 = MAXVAL(state%maxn_occ) + nder
ALLOCATE (rbasis(s1, s2, 0:lmat))
rbasis = 0._dp
DO ider = -nder, nder
dene = REAL(ider, KIND=dp)*delta
CPASSERT(fhomo > ABS(dene))
state%occupation(lhomo, nhomo) = fhomo + dene
CALL calculate_atom(atom, iw=0, noguess=.TRUE.)
wfn(:, :, :, ider) = atom%orbitals%wfn
state%occupation(lhomo, nhomo) = fhomo
END DO
DO l = 0, state%maxl_occ
! occupied states
DO i = 1, MAX(state%maxn_occ(l), 1)
rbasis(:, i, l) = wfn(:, i, l, 0)
END DO
! differentiation
DO ider = 1, nder
i = MAX(state%maxn_occ(l), 1)
SELECT CASE (ider)
CASE (1)
rbasis(:, i + 1, l) = 0.5_dp*(wfn(:, i, l, 1) - wfn(:, i, l, -1))/delta
CASE (2)
rbasis(:, i + 2, l) = 0.25_dp*(wfn(:, i, l, 2) - 2._dp*wfn(:, i, l, 0) + wfn(:, i, l, -2))/delta**2
CASE (3)
rbasis(:, i + 3, l) = 0.125_dp*(wfn(:, i, l, 3) - 3._dp*wfn(:, i, l, 1) &
+ 3._dp*wfn(:, i, l, -1) - wfn(:, i, l, -3))/delta**3
CASE DEFAULT
CPABORT("")
END SELECT
END DO
! orthogonalization, use gram-schmidt in order to keep the natural order (semi-core, valence, response) of the wfn.
n = state%maxn_occ(l) + nder
m = atom%basis%nbas(l)
DO i = 1, n
DO j = 1, i - 1
o = DOT_PRODUCT(rbasis(1:m, j, l), RESHAPE(MATMUL(ovlp(1:m, 1:m, l), rbasis(1:m, i:i, l)), (/m/)))
rbasis(1:m, i, l) = rbasis(1:m, i, l) - o*rbasis(1:m, j, l)
ENDDO
o = DOT_PRODUCT(rbasis(1:m, i, l), RESHAPE(MATMUL(ovlp(1:m, 1:m, l), rbasis(1:m, i:i, l)), (/m/)))
rbasis(1:m, i, l) = rbasis(1:m, i, l)/SQRT(o)
ENDDO
! check
ALLOCATE (amat(n, n))
amat(1:n, 1:n) = MATMUL(TRANSPOSE(rbasis(1:m, 1:n, l)), MATMUL(ovlp(1:m, 1:m, l), rbasis(1:m, 1:n, l)))
DO i = 1, n
amat(i, i) = amat(i, i) - 1._dp
END DO
IF (MAXVAL(ABS(amat)) > 1.e-12) THEN
WRITE (iw, '(/,A,G20.10)') " Orthogonality error ", MAXVAL(ABS(amat))
END IF
DEALLOCATE (amat)
! Quickstep normalization
WRITE (iw, '(/,A,T30,I3)') " Angular momentum :", l
WRITE (iw, '(/,A,I0,A,I0,A)') " Exponent Coef.(Quickstep Normalization), first ", &
n - nder, " valence ", nder, " response"
expzet = 0.25_dp*REAL(2*l + 3, dp)
prefac = SQRT(SQRT(pi)/2._dp**(l + 2)*dfac(2*l + 1))
DO i = 1, m
zeta = (2._dp*atom%basis%am(i, l))**expzet
WRITE (iw, '(4X,F20.10,4X,15ES20.6)') atom%basis%am(i, l), ((prefac*rbasis(i, k, l)/zeta), k=1, n)
END DO
END DO
DEALLOCATE (wfn, rbasis)
WRITE (iw, '(" ",79("*"))')
END SUBROUTINE atom_response_basis
! **************************************************************************************************
!> \brief Write pseudo-potential in Quantum Espresso UPF format.
!> \param atom information about the atomic kind
!> \param iw output file unit
!> \par History
!> * 09.2012 created [Juerg Hutter]
! **************************************************************************************************
SUBROUTINE atom_write_upf(atom, iw)
TYPE(atom_type), POINTER :: atom
INTEGER, INTENT(IN) :: iw
CHARACTER(len=*), PARAMETER :: routineN = 'atom_write_upf', routineP = moduleN//':'//routineN
CHARACTER(LEN=default_string_length) :: string
INTEGER :: i, ibeta, j, k, l, lmax, nbeta, nr, &
nwfc, nwfn
LOGICAL :: up
REAL(KIND=dp) :: pf, rl, rmax
REAL(KIND=dp), ALLOCATABLE, DIMENSION(:) :: beta, corden, dens, ef, locpot, rp
REAL(KIND=dp), ALLOCATABLE, DIMENSION(:, :) :: dij
TYPE(atom_gthpot_type), POINTER :: pot
IF (.NOT. atom%pp_calc) RETURN
IF (atom%potential%ppot_type /= gth_pseudo) RETURN
pot => atom%potential%gth_pot
CPASSERT(.NOT. pot%lsdpot)
WRITE (iw, '(A)') '<UPF version="2.0.1">'
WRITE (iw, '(T4,A)') '<PP_INFO>'
WRITE (iw, '(T8,A)') 'Converted from CP2K GTH format'
WRITE (iw, '(T8,A)') '<PP_INPUTFILE>'
CALL atom_write_pseudo_param(pot, iw)
WRITE (iw, '(T8,A)') '</PP_INPUTFILE>'
WRITE (iw, '(T4,A)') '</PP_INFO>'
WRITE (iw, '(T4,A)') '<PP_HEADER'
WRITE (iw, '(T8,A)') 'generated="Generated in analytical, separable form"'
WRITE (iw, '(T8,A)') 'author="Goedecker/Hartwigsen/Hutter/Teter"'
WRITE (iw, '(T8,A)') 'date="Phys.Rev.B58, 3641 (1998); B54, 1703 (1996)"'
WRITE (iw, '(T8,A)') 'comment="This file generated by CP2K ATOM code"'
CALL compose(string, "element", cval=pot%symbol)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'pseudo_type="NC"'
WRITE (iw, '(T8,A)') 'relativistic="no"'
WRITE (iw, '(T8,A)') 'is_ultrasoft="F"'
WRITE (iw, '(T8,A)') 'is_paw="F"'
WRITE (iw, '(T8,A)') 'is_coulomb="F"'
WRITE (iw, '(T8,A)') 'has_so="F"'
WRITE (iw, '(T8,A)') 'has_wfc="F"'
WRITE (iw, '(T8,A)') 'has_gipaw="F"'
WRITE (iw, '(T8,A)') 'paw_as_gipaw="F"'
IF (pot%nlcc) THEN
WRITE (iw, '(T8,A)') 'core_correction="T"'
ELSE
WRITE (iw, '(T8,A)') 'core_correction="F"'
END IF
WRITE (iw, '(T8,A)') 'functional="DFT"'
CALL compose(string, "z_valence", rval=pot%zion)
WRITE (iw, '(T8,A)') TRIM(string)
CALL compose(string, "total_psenergy", rval=2._dp*atom%energy%etot)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'wfc_cutoff="0.0E+00"'
WRITE (iw, '(T8,A)') 'rho_cutoff="0.0E+00"'
lmax = -1
DO l = 0, lmat
IF (pot%nl(l) > 0) lmax = l
END DO
CALL compose(string, "l_max", ival=lmax)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'l_max_rho="0"'
WRITE (iw, '(T8,A)') 'l_local="-3"'
nr = atom%basis%grid%nr
CALL compose(string, "mesh_size", ival=nr)
WRITE (iw, '(T8,A)') TRIM(string)
nwfc = SUM(atom%state%maxn_occ)
CALL compose(string, "number_of_wfc", ival=nwfc)
WRITE (iw, '(T8,A)') TRIM(string)
nbeta = SUM(pot%nl)
CALL compose(string, "number_of_proj", ival=nbeta)
WRITE (iw, '(T8,A)') TRIM(string)//'/>'
! Mesh
up = atom%basis%grid%rad(1) < atom%basis%grid%rad(nr)
WRITE (iw, '(T4,A)') '<PP_MESH'
WRITE (iw, '(T8,A)') 'dx="1.E+00"'
CALL compose(string, "mesh", ival=nr)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'xmin="1.E+00"'
rmax = MAXVAL(atom%basis%grid%rad)
CALL compose(string, "rmax", rval=rmax)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'zmesh="1.E+00">'
WRITE (iw, '(T8,A)') '<PP_R type="real"'
CALL compose(string, "size", ival=nr)
WRITE (iw, '(T12,A)') TRIM(string)
WRITE (iw, '(T12,A)') 'columns="4">'
IF (up) THEN
WRITE (iw, '(T12,4ES25.12E3)') (atom%basis%grid%rad(i), i=1, nr)
ELSE
WRITE (iw, '(T12,4ES25.12E3)') (atom%basis%grid%rad(i), i=nr, 1, -1)
END IF
WRITE (iw, '(T8,A)') '</PP_R>'
WRITE (iw, '(T8,A)') '<PP_RAB type="real"'
CALL compose(string, "size", ival=nr)
WRITE (iw, '(T12,A)') TRIM(string)
WRITE (iw, '(T12,A)') 'columns="4">'
IF (up) THEN
WRITE (iw, '(T12,4ES25.12E3)') (atom%basis%grid%wr(i)/atom%basis%grid%rad2(i), i=1, nr)
ELSE
WRITE (iw, '(T12,4ES25.12E3)') (atom%basis%grid%wr(i)/atom%basis%grid%rad2(i), i=nr, 1, -1)
END IF
WRITE (iw, '(T8,A)') '</PP_RAB>'
WRITE (iw, '(T4,A)') '</PP_MESH>'
! NLCC
IF (pot%nlcc) THEN
WRITE (iw, '(T4,A)') '<PP_NLCC type="real"'
CALL compose(string, "size", ival=nr)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'columns="4">'
ALLOCATE (corden(nr))
corden(:) = 0.0_dp
CALL atom_core_density(corden, atom%potential, "RHO", atom%basis%grid%rad)
IF (up) THEN
WRITE (iw, '(T8,4ES25.12E3)') (corden(i), i=1, nr)
ELSE
WRITE (iw, '(T8,4ES25.12E3)') (corden(i), i=nr, 1, -1)
END IF
DEALLOCATE (corden)
WRITE (iw, '(T4,A)') '</PP_NLCC>'
END IF
! local PP
WRITE (iw, '(T4,A)') '<PP_LOCAL type="real"'
CALL compose(string, "size", ival=nr)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'columns="4">'
ALLOCATE (locpot(nr))
locpot(:) = 0.0_dp
CALL atom_local_potential(locpot, pot, atom%basis%grid%rad)
IF (up) THEN
WRITE (iw, '(T8,4ES25.12E3)') (2.0_dp*locpot(i), i=1, nr)
ELSE
WRITE (iw, '(T8,4ES25.12E3)') (2.0_dp*locpot(i), i=nr, 1, -1)
END IF
DEALLOCATE (locpot)
WRITE (iw, '(T4,A)') '</PP_LOCAL>'
! nonlocal PP
WRITE (iw, '(T4,A)') '<PP_NONLOCAL>'
ALLOCATE (rp(nr), ef(nr), beta(nr))
ibeta = 0
DO l = 0, lmat
IF (pot%nl(l) == 0) CYCLE
rl = pot%rcnl(l)
rp(:) = atom%basis%grid%rad
ef(:) = EXP(-0.5_dp*rp*rp/(rl*rl))
DO i = 1, pot%nl(l)
pf = rl**(l + 0.5_dp*(4._dp*i - 1._dp))
j = l + 2*i - 1
pf = SQRT(2._dp)/(pf*SQRT(gamma1(j)))
beta(:) = pf*rp**(l + 2*i - 2)*ef
ibeta = ibeta + 1
CALL compose(string, "<PP_BETA", counter=ibeta)
WRITE (iw, '(T8,A)') TRIM(string)
CALL compose(string, "angular_momentum", ival=l)
WRITE (iw, '(T12,A)') TRIM(string)
WRITE (iw, '(T12,A)') 'type="real"'
CALL compose(string, "size", ival=nr)
WRITE (iw, '(T12,A)') TRIM(string)
WRITE (iw, '(T12,A)') 'columns="4">'
beta(:) = beta*rp
IF (up) THEN
WRITE (iw, '(T12,4ES25.12E3)') (2._dp*beta(j), j=1, nr)
ELSE
WRITE (iw, '(T12,4ES25.12E3)') (2._dp*beta(j), j=nr, 1, -1)
END IF
CALL compose(string, "</PP_BETA", counter=ibeta, isfinal=.TRUE.)
WRITE (iw, '(T8,A)') TRIM(string)
END DO
END DO
DEALLOCATE (rp, ef, beta)
! nonlocal PP matrix elements
ALLOCATE (dij(nbeta, nbeta))
dij = 0._dp
DO l = 0, lmat
IF (pot%nl(l) == 0) CYCLE
ibeta = SUM(pot%nl(0:l - 1)) + 1
i = ibeta + pot%nl(l) - 1
dij(ibeta:i, ibeta:i) = pot%hnl(1:pot%nl(l), 1:pot%nl(l), l)
END DO
WRITE (iw, '(T8,A)') '<PP_DIJ type="real"'
WRITE (iw, '(T12,A)') 'columns="4">'
WRITE (iw, '(T12,4ES25.12E3)') ((0.5_dp*dij(i, j), j=1, nbeta), i=1, nbeta)
WRITE (iw, '(T8,A)') '</PP_DIJ>'
DEALLOCATE (dij)
WRITE (iw, '(T4,A)') '</PP_NONLOCAL>'
! atomic wavefunctions
ALLOCATE (beta(nr))
WRITE (iw, '(T4,A)') '<PP_PSWFC>'
nwfn = 0
DO l = 0, lmat
DO i = 1, 10
IF (ABS(atom%state%occupation(l, i)) == 0._dp) CYCLE
nwfn = nwfn + 1
CALL compose(string, "<PP_CHI", counter=nwfn)
WRITE (iw, '(T8,A)') TRIM(string)
CALL compose(string, "l", ival=l)
WRITE (iw, '(T12,A)') TRIM(string)
CALL compose(string, "occupation", rval=atom%state%occupation(l, i))
WRITE (iw, '(T12,A)') TRIM(string)
CALL compose(string, "pseudo_energy", rval=2._dp*atom%orbitals%ener(i, l))
WRITE (iw, '(T12,A)') TRIM(string)
WRITE (iw, '(T12,A)') 'columns="4">'
beta = 0._dp
DO k = 1, atom%basis%nbas(l)
beta(:) = beta(:) + atom%orbitals%wfn(k, i, l)*atom%basis%bf(:, k, l)
END DO
beta(:) = beta*atom%basis%grid%rad
IF (up) THEN
WRITE (iw, '(T12,4ES25.12E3)') (beta(j)*atom%basis%grid%rad(j), j=1, nr)
ELSE
WRITE (iw, '(T12,4ES25.12E3)') (beta(j)*atom%basis%grid%rad(j), j=nr, 1, -1)
END IF
CALL compose(string, "</PP_CHI", counter=nwfn, isfinal=.TRUE.)
WRITE (iw, '(T8,A)') TRIM(string)
END DO
END DO
WRITE (iw, '(T4,A)') '</PP_PSWFC>'
DEALLOCATE (beta)
! atomic charge
ALLOCATE (dens(nr))
WRITE (iw, '(T4,A)') '<PP_RHOATOM type="real"'
CALL compose(string, "size", ival=nr)
WRITE (iw, '(T8,A)') TRIM(string)
WRITE (iw, '(T8,A)') 'columns="4">'
CALL atom_density(dens, atom%orbitals%pmat, atom%basis, atom%state%maxl_occ, &
"RHO", atom%basis%grid%rad)
IF (up) THEN
WRITE (iw, '(T8,4ES25.12E3)') (4._dp*pi*dens(j)*atom%basis%grid%rad2(j), j=1, nr)
ELSE
WRITE (iw, '(T8,4ES25.12E3)') (4._dp*pi*dens(j)*atom%basis%grid%rad2(j), j=nr, 1, -1)
END IF
WRITE (iw, '(T4,A)') '</PP_RHOATOM>'
DEALLOCATE (dens)
WRITE (iw, '(A)') '</UPF>'
END SUBROUTINE atom_write_upf
! **************************************************************************************************
!> \brief Produce an XML attribute string 'tag="counter/rval/ival/cval"'
!> \param string composed string
!> \param tag attribute tag
!> \param counter counter
!> \param rval real variable
!> \param ival integer variable
!> \param cval string variable
!> \param isfinal close the current XML element if this is the last attribute
!> \par History
!> * 09.2012 created [Juerg Hutter]
! **************************************************************************************************
SUBROUTINE compose(string, tag, counter, rval, ival, cval, isfinal)
CHARACTER(len=*), INTENT(OUT) :: string
CHARACTER(len=*), INTENT(IN) :: tag
INTEGER, INTENT(IN), OPTIONAL :: counter
REAL(KIND=dp), INTENT(IN), OPTIONAL :: rval
INTEGER, INTENT(IN), OPTIONAL :: ival
CHARACTER(len=*), INTENT(IN), OPTIONAL :: cval
LOGICAL, INTENT(IN), OPTIONAL :: isfinal
CHARACTER(LEN=default_string_length) :: str
LOGICAL :: fin
IF (PRESENT(counter)) THEN
WRITE (str, "(I12)") counter
ELSEIF (PRESENT(rval)) THEN
WRITE (str, "(G18.8)") rval
ELSEIF (PRESENT(ival)) THEN
WRITE (str, "(I12)") ival
ELSEIF (PRESENT(cval)) THEN
WRITE (str, "(A)") TRIM(ADJUSTL(cval))
ELSE
WRITE (str, "(A)") ""
END IF
fin = .FALSE.
IF (PRESENT(isfinal)) fin = isfinal
IF (PRESENT(counter)) THEN
IF (fin) THEN
WRITE (string, "(A,A1,A,A1)") TRIM(ADJUSTL(tag)), '.', TRIM(ADJUSTL(str)), '>'
ELSE
WRITE (string, "(A,A1,A)") TRIM(ADJUSTL(tag)), '.', TRIM(ADJUSTL(str))
END IF
ELSE
IF (fin) THEN
WRITE (string, "(A,A2,A,A2)") TRIM(ADJUSTL(tag)), '="', TRIM(ADJUSTL(str)), '>"'
ELSE
WRITE (string, "(A,A2,A,A1)") TRIM(ADJUSTL(tag)), '="', TRIM(ADJUSTL(str)), '"'
END IF
END IF
END SUBROUTINE compose
END MODULE atom_energy