diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.13-GCC-12.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.13-GCC-12.3.0.eb new file mode 100644 index 00000000000..7277c50ff97 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.13-GCC-12.3.0.eb @@ -0,0 +1,25 @@ +name = 'SAMtools' +version = '1.13' + +homepage = 'https://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'GCC', 'version': '12.3.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/%(namelower)s/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['616ca2e051cc8009a1e9c01cfd8c7caf8b70916ddff66f3b76914079465f8c60'] + +# The htslib component of SAMtools >= 1.4 uses zlib, bzip2 and lzma compression. +# The latter is currently provided by XZ. +dependencies = [ + ('ncurses', '6.4'), + ('zlib', '1.2.13'), + ('bzip2', '1.0.8'), + ('XZ', '5.4.2'), + ('cURL', '8.0.1'), +] + +moduleclass = 'bio' \ No newline at end of file