From 7881b56904e588dcf36386eb192ac24ccf1cc8f1 Mon Sep 17 00:00:00 2001
From: Tunc Kayikcioglu <19364610+tuncK@users.noreply.github.com>
Date: Tue, 28 Mar 2023 20:47:48 +0200
Subject: [PATCH] metaphlan  v4.0.5 -> v4.0.6 (#5218)

* metaphlan v4.0.6

* Update tools/metaphlan/macros.xml

* remove metaphlan DM from skip list

* Try to enable tests

* Revert "Try to enable tests"

This reverts commit 0f1d8f87a9aa426efef2ab2f8d2649686a3b9284.

---------

Co-authored-by: M Bernt <m.bernt@ufz.de>
---
 .tt_skip                                                      | 1 -
 .../data_manager/data_manager_metaphlan_download.xml          | 4 +++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/.tt_skip b/.tt_skip
index 157776ede39..17c99632686 100644
--- a/.tt_skip
+++ b/.tt_skip
@@ -1,4 +1,3 @@
-data_managers/data_manager_metaphlan_database_downloader/
 data_managers/data_manager_rsync_g2/
 tools/coverage_report/
 tools/ebi_tools/
diff --git a/data_managers/data_manager_metaphlan_database_downloader/data_manager/data_manager_metaphlan_download.xml b/data_managers/data_manager_metaphlan_database_downloader/data_manager/data_manager_metaphlan_download.xml
index de76f8b67ae..0d2ca8f79a6 100644
--- a/data_managers/data_manager_metaphlan_database_downloader/data_manager/data_manager_metaphlan_download.xml
+++ b/data_managers/data_manager_metaphlan_database_downloader/data_manager/data_manager_metaphlan_download.xml
@@ -4,7 +4,7 @@
         <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
     </requirements>
     <macros>
-        <token name="@TOOL_VERSION@">4.0.5</token>
+        <token name="@TOOL_VERSION@">4.0.6</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <stdio>
@@ -26,6 +26,7 @@ python '$__tool_directory__/data_manager_metaphlan_download.py'
         <data name="out_file" format="data_manager_json" label="${tool.name}"/>
     </outputs>
     <tests>
+        <!--
         <test expect_num_outputs="1">
             <param name="index" value="mpa_vOct22_CHOCOPhlAnSGB_202212"/>
             <output name="out_file">
@@ -35,6 +36,7 @@ python '$__tool_directory__/data_manager_metaphlan_download.py'
                 </assert_contents>
             </output>
         </test>
+        -->
     </tests>
     <help><![CDATA[
 This tool downloads and builds the MetaPhlAn databases.