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base repository: pangenome/smoothxg
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base: v0.8.0
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head repository: pangenome/smoothxg
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compare: master
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  • 4 commits
  • 2 files changed
  • 2 contributors

Commits on Nov 12, 2024

  1. Verified

    This commit was signed with the committer’s verified signature.
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    b0e10b9 View commit details

Commits on Nov 16, 2024

  1. Merge pull request #212 from ASLeonard/master

    Fix: use output of previous smoothing iteration as input for next
    AndreaGuarracino authored Nov 16, 2024
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    e93c623 View commit details

Commits on Feb 12, 2025

  1. update GitHub Actions workflow to use ubuntu-latest

    AndreaGuarracino authored Feb 12, 2025
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    d6fca9f View commit details
  2. Merge pull request #213 from pangenome/AndreaGuarracino-patch-1

    update GitHub Actions workflow to use ubuntu-latest
    AndreaGuarracino authored Feb 12, 2025
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    1007377 View commit details
Showing with 2 additions and 2 deletions.
  1. +1 −1 .github/workflows/small_test_on_push.yml
  2. +1 −1 src/main.cpp
2 changes: 1 addition & 1 deletion .github/workflows/small_test_on_push.yml
Original file line number Diff line number Diff line change
@@ -4,7 +4,7 @@ name: build and test

jobs:
build_and_test:
runs-on: ubuntu-20.04
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Install required packages
2 changes: 1 addition & 1 deletion src/main.cpp
Original file line number Diff line number Diff line change
@@ -429,7 +429,7 @@ int main(int argc, char **argv) {
gfa_in_name = args::get(tmp_base) + '/' + filename + ".prep." + std::to_string(current_iter) + ".gfa";
}
std::cerr << smoothxg_iter << "::main] prepping graph for smoothing" << std::endl;
smoothxg::prep(args::get(gfa_in), gfa_in_name, node_chop,
smoothxg::prep(path_input_gfa, gfa_in_name, node_chop,
term_updates, true, temp_file::get_dir() + '/', n_threads,
smoothxg_iter);
} else {