From feda06d6de627f721f9c7b96bbface45cb59fdb8 Mon Sep 17 00:00:00 2001 From: Philipp Rudiger Date: Mon, 16 Dec 2024 18:38:39 +0100 Subject: [PATCH] Update README --- README.md | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index eca57a3..6fa9a9c 100644 --- a/README.md +++ b/README.md @@ -1,9 +1,12 @@ -# `panel-neuroglancer` +# `panel-neuroglancer` + Use HoloViz [`Panel`](https://panel.holoviz.org/) to integrate [Neuroglancer](https://www.github.com/google/neuroglancer) into Jupyter notebook workflows and applications for scientifically contextualized, reproducible, and extensible workflows involving large volumetric datasets, such as those from electron and fluorescent microscopy. See the [Overview](#overview) below for more explanation. ## Usage + ### Option 1 - Load from a neuroglancer url: -Either use `NeuroglancerNB(source=)` or just run `NeuroglancerNB()` and input the URL in the GUI: + +Either use `Neuroglancer(source=)` or just run `Neuroglancer()` and input the URL in the GUI: ![](assets/demo_fromurl.png) @@ -21,8 +24,9 @@ with viewer.txn() as s: s.layers["segmentation"] = neuroglancer.SegmentationLayer( source="precomputed://gs://neuroglancer-janelia-flyem-hemibrain/v1.1/segmentation", ) -NeuroglancerNB(source=viewer, show_state=True) +Neuroglancer(source=viewer, show_state=True) ``` + ![](assets/demo_fromviewer.png) ## Overview