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BUILD: install from source fails using Docker not Podman (nothing provides requested pytorch) #47737

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1 task done
jmg-duarte opened this issue Jul 15, 2022 · 1 comment
Closed
1 task done

BUILD: install from source fails using Docker not Podman (nothing provides requested pytorch) #47737

jmg-duarte opened this issue Jul 15, 2022 · 1 comment
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Build Library building on various platforms

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@jmg-duarte
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jmg-duarte commented Jul 15, 2022 •
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Installation check

Platform

Docker (arm64)

Installation Method

Built from source

pandas Version

master

Python Version

?

Installation Logs

Docker:

[15:35:54] Φ docker build --build-arg gh_username="jmg-duarte" --tag=pandas . [+] Building 69.6s (8/9) => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 2.00kB 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for quay.io/condaforge/miniforge3:latest 1.4s => [1/6] FROM quay.io/condaforge/miniforge3@sha256:b7b54dfc13e82726f132b4d012c6d5c7346e8b8c96386321a34df62ff4956901 9.9s => => resolve quay.io/condaforge/miniforge3@sha256:b7b54dfc13e82726f132b4d012c6d5c7346e8b8c96386321a34df62ff4956901 0.0s => => sha256:b7b54dfc13e82726f132b4d012c6d5c7346e8b8c96386321a34df62ff4956901 1.05kB / 1.05kB 0.0s => => sha256:6345ac70f719afac3678401e98972abe0c2441060d3df889274579b2348bf105 741B / 741B 0.0s => => sha256:1936967c1ff08df1ed0744490c33feb96a953589c3d527772282865f29312621 3.95kB / 3.95kB 0.0s => => sha256:11e23ac719b33170b39b7e30b8027dc09c9cbad6b503b2b6b3ebbd9d33f4adad 27.19MB / 27.19MB 7.0s => => sha256:c9a816e0f65afabf3b2ba198e388502c8f97366a66649137e06aa10d2cb17d1c 69.53MB / 69.53MB 4.9s => => extracting sha256:11e23ac719b33170b39b7e30b8027dc09c9cbad6b503b2b6b3ebbd9d33f4adad 0.7s => => extracting sha256:c9a816e0f65afabf3b2ba198e388502c8f97366a66649137e06aa10d2cb17d1c 2.0s => [2/6] RUN apt-get update && apt-get -y install --no-install-recommends apt-utils dialog 2>&1 && apt-get -y 11.2s => [3/6] RUN mkdir "/home/pandas" && git clone "https://github.com/jmg-duarte/pandas.git" "/home/pandas" && cd 23.9s => [4/6] RUN conda install -y mamba 11.4s => ERROR [5/6] RUN mamba env update -n base -f "/home/pandas/environment.yml" 11.6s ------ > [5/6] RUN mamba env update -n base -f "/home/pandas/environment.yml": #7 11.46 Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies. Conda may not use the correct pip to install your packages, and they may end up in the wrong place. Please add an explicit pip dependency. I'm adding one for you, but still nagging you. #7 11.46 #7 11.46 #7 11.46 Looking for: ['pip', 'python=3.8', 'cython=0.29.30', "pytest[version='>=6.0']", 'pytest-cov', "pytest-xdist[version='>=1.31']", 'psutil', "pytest-asyncio[version='>=0.17']", 'boto3', 'python-dateutil', 'numpy', 'pytz', 'beautifulsoup4', 'blosc', 'brotlipy', 'bottleneck', 'fastparquet', 'fsspec', 'html5lib', 'hypothesis', 'gcsfs', 'jinja2', 'lxml', 'matplotlib', "numba[version='>=0.53.1']", "numexpr[version='>=2.8.0']", 'openpyxl', 'odfpy', 'pandas-gbq', 'psycopg2', 'pyarrow', 'pymysql', 'pyreadstat', 'pytables', 'python-snappy', 'pyxlsb', 's3fs', 'scipy', 'sqlalchemy', 'tabulate', 'xarray', 'xlrd', 'xlsxwriter', 'xlwt', 'zstandard', "aiobotocore[version='<2.0.0']", 'botocore', 'cftime', 'dask', 'ipython', 'geopandas-base', 'seaborn', 'scikit-learn', 'statsmodels', 'coverage', 'pandas-datareader', 'pyyaml', 'py', 'pytorch', 'moto', 'flask', 'asv', 'c-compiler', 'cxx-compiler', 'black=22.3.0', 'cpplint', 'flake8=4.0.1', 'flake8-bugbear=21.3.2', 'flake8-comprehensions=3.7.0', "isort[version='>=5.2.1']", 'mypy=0.960', "pre-commit[version='>=2.15.0']", 'pycodestyle', 'pyupgrade', 'gitpython', 'gitdb', 'natsort', 'numpydoc', 'pandas-dev-flaker=0.5.0', 'pydata-sphinx-theme=0.8.0', 'pytest-cython', 'sphinx', 'sphinx-panels', 'types-python-dateutil', 'types-pymysql', 'types-pytz', 'types-setuptools', "nbconvert[version='>=6.4.5']", 'nbsphinx', 'pandoc', 'ipywidgets', 'nbformat', "notebook[version='>=6.0.3']", 'ipykernel', 'jinja2', 'markdown', 'feedparser', 'pyyaml', 'requests', "jupyterlab[version='>=3.4,<4']"] #7 11.46 #7 11.46 #7 11.46 Encountered problems while solving: #7 11.46 - nothing provides requested pytorch #7 11.46 ------ executor failed running [/bin/sh -c mamba env update -n base -f "$pandas_home/environment.yml"]: exit code: 1

Podman

[15:28:25] Φ podman build --build-arg gh_username="jmg-duarte" --tag=pandas . STEP 1/11: FROM quay.io/condaforge/miniforge3 Trying to pull quay.io/condaforge/miniforge3:latest... Getting image source signatures Copying blob sha256:c9a816e0f65afabf3b2ba198e388502c8f97366a66649137e06aa10d2cb17d1c Copying blob sha256:11e23ac719b33170b39b7e30b8027dc09c9cbad6b503b2b6b3ebbd9d33f4adad Copying blob sha256:c9a816e0f65afabf3b2ba198e388502c8f97366a66649137e06aa10d2cb17d1c Copying blob sha256:11e23ac719b33170b39b7e30b8027dc09c9cbad6b503b2b6b3ebbd9d33f4adad Copying config sha256:1936967c1ff08df1ed0744490c33feb96a953589c3d527772282865f29312621 Writing manifest to image destination Storing signatures STEP 2/11: ARG gh_username=pandas-dev --> d7e99c0946a STEP 3/11: ARG pandas_home="/home/pandas" --> ba2b3927cea STEP 4/11: ENV DEBIAN_FRONTEND=noninteractive --> 117efc773c7 STEP 5/11: RUN apt-get update && apt-get -y install --no-install-recommends apt-utils dialog 2>&1 && apt-get -y install tzdata && ln -fs /usr/share/zoneinfo/Etc/UTC /etc/localtime && dpkg-reconfigure -f noninteractive tzdata && apt-get -y install git iproute2 procps iproute2 lsb-release && apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* Get:1 http://ports.ubuntu.com/ubuntu-ports focal InRelease [265 kB] Get:2 http://ports.ubuntu.com/ubuntu-ports focal-updates InRelease [114 kB] Get:3 http://ports.ubuntu.com/ubuntu-ports focal-backports InRelease [108 kB] Get:4 http://ports.ubuntu.com/ubuntu-ports focal-security InRelease [114 kB] Get:5 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 Packages [1234 kB] Get:6 http://ports.ubuntu.com/ubuntu-ports focal/universe arm64 Packages [11.1 MB] Get:7 http://ports.ubuntu.com/ubuntu-ports focal/restricted arm64 Packages [1317 B] Get:8 http://ports.ubuntu.com/ubuntu-ports focal/multiverse arm64 Packages [139 kB] Get:9 http://ports.ubuntu.com/ubuntu-ports focal-updates/restricted arm64 Packages [4578 B] Get:10 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 Packages [1741 kB] Get:11 http://ports.ubuntu.com/ubuntu-ports focal-updates/multiverse arm64 Packages [9068 B] Get:12 http://ports.ubuntu.com/ubuntu-ports focal-updates/universe arm64 Packages [1096 kB] Get:13 http://ports.ubuntu.com/ubuntu-ports focal-backports/main arm64 Packages [53.8 kB] Get:14 http://ports.ubuntu.com/ubuntu-ports focal-backports/universe arm64 Packages [27.1 kB] Get:15 http://ports.ubuntu.com/ubuntu-ports focal-security/main arm64 Packages [1362 kB] Get:16 http://ports.ubuntu.com/ubuntu-ports focal-security/multiverse arm64 Packages [3257 B] Get:17 http://ports.ubuntu.com/ubuntu-ports focal-security/restricted arm64 Packages [4339 B] Get:18 http://ports.ubuntu.com/ubuntu-ports focal-security/universe arm64 Packages [817 kB] Fetched 18.2 MB in 2s (10.4 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: apt libapt-pkg6.0 Suggested packages: apt-doc aptitude | synaptic | wajig dpkg-dev gnupg | gnupg2 | gnupg1 powermgmt-base The following NEW packages will be installed: apt-utils dialog The following packages will be upgraded: apt libapt-pkg6.0 2 upgraded, 2 newly installed, 0 to remove and 11 not upgraded. Need to get 2427 kB of archives. After this operation, 1992 kB of additional disk space will be used. Get:1 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 libapt-pkg6.0 arm64 2.0.9 [763 kB] Get:2 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 apt arm64 2.0.9 [1243 kB] Get:3 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 apt-utils arm64 2.0.9 [201 kB] Get:4 http://ports.ubuntu.com/ubuntu-ports focal/universe arm64 dialog arm64 1.3-20190808-1 [220 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2427 kB in 1s (4489 kB/s) (Reading database ... 7514 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.9_arm64.deb ... Unpacking libapt-pkg6.0:arm64 (2.0.9) over (2.0.8) ... Setting up libapt-pkg6.0:arm64 (2.0.9) ... (Reading database ... 7514 files and directories currently installed.) Preparing to unpack .../archives/apt_2.0.9_arm64.deb ... Unpacking apt (2.0.9) over (2.0.8) ... Setting up apt (2.0.9) ... Selecting previously unselected package apt-utils. (Reading database ... 7514 files and directories currently installed.) Preparing to unpack .../apt-utils_2.0.9_arm64.deb ... Unpacking apt-utils (2.0.9) ... Selecting previously unselected package dialog. Preparing to unpack .../dialog_1.3-20190808-1_arm64.deb ... Unpacking dialog (1.3-20190808-1) ... Setting up apt-utils (2.0.9) ... Setting up dialog (1.3-20190808-1) ... Processing triggers for libc-bin (2.31-0ubuntu9.9) ... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: tzdata 0 upgraded, 1 newly installed, 0 to remove and 11 not upgraded. Need to get 294 kB of archives. After this operation, 4029 kB of additional disk space will be used. Get:1 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 tzdata all 2022a-0ubuntu0.20.04 [294 kB] Preconfiguring packages ... Fetched 294 kB in 0s (973 kB/s) Selecting previously unselected package tzdata. (Reading database ... 7744 files and directories currently installed.) Preparing to unpack .../tzdata_2022a-0ubuntu0.20.04_all.deb ... Unpacking tzdata (2022a-0ubuntu0.20.04) ... Setting up tzdata (2022a-0ubuntu0.20.04) ...

Current default time zone: 'Etc/UTC'
Local time is now: Fri Jul 15 14:34:45 UTC 2022.
Universal Time is now: Fri Jul 15 14:34:45 UTC 2022.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Current default time zone: 'Etc/UTC'
Local time is now: Fri Jul 15 14:34:45 UTC 2022.
Universal Time is now: Fri Jul 15 14:34:45 UTC 2022.

Reading package lists...
Building dependency tree...
Reading state information...
procps is already the newest version (2:3.3.16-1ubuntu2.3).
The following additional packages will be installed:
distro-info-data file libatm1 libbsd0 libcap2 libcap2-bin libelf1
libmagic-mgc libmagic1 libmnl0 libmpdec2 libpam-cap libpython3-stdlib
libpython3.8-minimal libpython3.8-stdlib libreadline8 libxtables12
mime-support python3 python3-minimal python3.8 python3.8-minimal
readline-common xz-utils
Suggested packages:
gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email
git-gui gitk gitweb git-cvs git-mediawiki git-svn iproute2-doc python3-doc
python3-tk python3-venv python3.8-venv python3.8-doc binutils binfmt-support
readline-doc
Recommended packages:
patch less ssh-client
The following NEW packages will be installed:
distro-info-data file iproute2 libatm1 libbsd0 libcap2 libcap2-bin libelf1
libmagic-mgc libmagic1 libmnl0 libmpdec2 libpam-cap libpython3-stdlib
libpython3.8-minimal libpython3.8-stdlib libreadline8 libxtables12
lsb-release mime-support python3 python3-minimal python3.8 python3.8-minimal
readline-common xz-utils
The following packages will be upgraded:
git
1 upgraded, 26 newly installed, 0 to remove and 10 not upgraded.
Need to get 10.7 MB of archives.
After this operation, 30.1 MB of additional disk space will be used.
Get:1 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 libpython3.8-minimal arm64 3.8.10-0ubuntu120.04.5 [714 kB]
Get:2 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 python3.8-minimal arm64 3.8.10-0ubuntu120.04.5 [1831 kB]
Get:3 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 python3-minimal arm64 3.8.2-0ubuntu2 [23.6 kB]
Get:4 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 mime-support all 3.64ubuntu1 [30.6 kB]
Get:5 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libmpdec2 arm64 2.4.2-3 [79.6 kB]
Get:6 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 readline-common all 8.0-4 [53.5 kB]
Get:7 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libreadline8 arm64 8.0-4 [123 kB]
Get:8 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 libpython3.8-stdlib arm64 3.8.10-0ubuntu120.04.5 [1649 kB]
Get:9 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 python3.8 arm64 3.8.10-0ubuntu120.04.5 [387 kB]
Get:10 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libpython3-stdlib arm64 3.8.2-0ubuntu2 [7068 B]
Get:11 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 python3 arm64 3.8.2-0ubuntu2 [47.6 kB]
Get:12 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 distro-info-data all 0.43ubuntu1.10 [4704 B]
Get:13 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libmagic-mgc arm64 1:5.38-4 [218 kB]
Get:14 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libmagic1 arm64 1:5.38-4 [71.7 kB]
Get:15 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 file arm64 1:5.38-4 [23.3 kB]
Get:16 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB]
Get:17 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libcap2 arm64 1:2.32-1 [15.5 kB]
Get:18 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libelf1 arm64 0.176-1.1build1 [44.2 kB]
Get:19 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libmnl0 arm64 1.0.4-2 [11.3 kB]
Get:20 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libxtables12 arm64 1.8.4-3ubuntu2 [27.3 kB]
Get:21 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libcap2-bin arm64 1:2.32-1 [25.7 kB]
Get:22 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 iproute2 arm64 5.5.0-1ubuntu1 [835 kB]
Get:23 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libatm1 arm64 1:2.5.1-4 [21.2 kB]
Get:24 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 libpam-cap arm64 1:2.32-1 [8280 B]
Get:25 http://ports.ubuntu.com/ubuntu-ports focal/main arm64 lsb-release all 11.1.0ubuntu2 [10.6 kB]
Get:26 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 xz-utils arm64 5.2.4-1ubuntu1.1 [81.4 kB]
Get:27 http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 git arm64 1:2.25.1-1ubuntu3.5 [4357 kB]
Preconfiguring packages ...
Fetched 10.7 MB in 1s (11.7 MB/s)
Selecting previously unselected package libpython3.8-minimal:arm64.
(Reading database ... 9659 files and directories currently installed.)
Preparing to unpack .../libpython3.8-minimal_3.8.10-0ubuntu120.04.5_arm64.deb ...
Unpacking libpython3.8-minimal:arm64 (3.8.10-0ubuntu120.04.5) ...
Selecting previously unselected package python3.8-minimal.
Preparing to unpack .../python3.8-minimal_3.8.10-0ubuntu120.04.5_arm64.deb ...
Unpacking python3.8-minimal (3.8.10-0ubuntu120.04.5) ...
Setting up libpython3.8-minimal:arm64 (3.8.10-0ubuntu120.04.5) ...
Setting up python3.8-minimal (3.8.10-0ubuntu120.04.5) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 9942 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_arm64.deb ...
Unpacking python3-minimal (3.8.2-0ubuntu2) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../1-mime-support_3.64ubuntu1_all.deb ...
Unpacking mime-support (3.64ubuntu1) ...
Selecting previously unselected package libmpdec2:arm64.
Preparing to unpack .../2-libmpdec2_2.4.2-3_arm64.deb ...
Unpacking libmpdec2:arm64 (2.4.2-3) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../3-readline-common_8.0-4_all.deb ...
Unpacking readline-common (8.0-4) ...
Selecting previously unselected package libreadline8:arm64.
Preparing to unpack .../4-libreadline8_8.0-4_arm64.deb ...
Unpacking libreadline8:arm64 (8.0-4) ...
Selecting previously unselected package libpython3.8-stdlib:arm64.
Preparing to unpack .../5-libpython3.8-stdlib_3.8.10-0ubuntu120.04.5_arm64.deb ...
Unpacking libpython3.8-stdlib:arm64 (3.8.10-0ubuntu120.04.5) ...
Selecting previously unselected package python3.8.
Preparing to unpack .../6-python3.8_3.8.10-0ubuntu120.04.5_arm64.deb ...
Unpacking python3.8 (3.8.10-0ubuntu120.04.5) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../7-libpython3-stdlib_3.8.2-0ubuntu2_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.8.2-0ubuntu2) ...
Setting up python3-minimal (3.8.2-0ubuntu2) ...
Selecting previously unselected package python3.
(Reading database ... 10366 files and directories currently installed.)
Preparing to unpack .../00-python3_3.8.2-0ubuntu2_arm64.deb ...
Unpacking python3 (3.8.2-0ubuntu2) ...
Selecting previously unselected package distro-info-data.
Preparing to unpack .../01-distro-info-data_0.43ubuntu1.10_all.deb ...
Unpacking distro-info-data (0.43ubuntu1.10) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.38-4_arm64.deb ...
Unpacking libmagic-mgc (1:5.38-4) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../03-libmagic1_1%3a5.38-4_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.38-4) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.38-4_arm64.deb ...
Unpacking file (1:5.38-4) ...
Selecting previously unselected package libbsd0:arm64.
Preparing to unpack .../05-libbsd0_0.10.0-1_arm64.deb ...
Unpacking libbsd0:arm64 (0.10.0-1) ...
Selecting previously unselected package libcap2:arm64.
Preparing to unpack .../06-libcap2_1%3a2.32-1_arm64.deb ...
Unpacking libcap2:arm64 (1:2.32-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../07-libelf1_0.176-1.1build1_arm64.deb ...
Unpacking libelf1:arm64 (0.176-1.1build1) ...
Selecting previously unselected package libmnl0:arm64.
Preparing to unpack .../08-libmnl0_1.0.4-2_arm64.deb ...
Unpacking libmnl0:arm64 (1.0.4-2) ...
Selecting previously unselected package libxtables12:arm64.
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Unpacking libxtables12:arm64 (1.8.4-3ubuntu2) ...
Selecting previously unselected package libcap2-bin.
Preparing to unpack .../10-libcap2-bin_1%3a2.32-1_arm64.deb ...
Unpacking libcap2-bin (1:2.32-1) ...
Selecting previously unselected package iproute2.
Preparing to unpack .../11-iproute2_5.5.0-1ubuntu1_arm64.deb ...
Unpacking iproute2 (5.5.0-1ubuntu1) ...
Selecting previously unselected package libatm1:arm64.
Preparing to unpack .../12-libatm1_1%3a2.5.1-4_arm64.deb ...
Unpacking libatm1:arm64 (1:2.5.1-4) ...
Selecting previously unselected package libpam-cap:arm64.
Preparing to unpack .../13-libpam-cap_1%3a2.32-1_arm64.deb ...
Unpacking libpam-cap:arm64 (1:2.32-1) ...
Selecting previously unselected package lsb-release.
Preparing to unpack .../14-lsb-release_11.1.0ubuntu2_all.deb ...
Unpacking lsb-release (11.1.0ubuntu2) ...
Selecting previously unselected package xz-utils.
Preparing to unpack .../15-xz-utils_5.2.4-1ubuntu1.1_arm64.deb ...
Unpacking xz-utils (5.2.4-1ubuntu1.1) ...
Preparing to unpack .../16-git_1%3a2.25.1-1ubuntu3.5_arm64.deb ...
Unpacking git (1:2.25.1-1ubuntu3.5) over (1:2.25.1-1ubuntu3.4) ...
Setting up mime-support (3.64ubuntu1) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up distro-info-data (0.43ubuntu1.10) ...
Setting up libmagic1:arm64 (1:5.38-4) ...
Setting up file (1:5.38-4) ...
Setting up libatm1:arm64 (1:2.5.1-4) ...
Setting up libcap2:arm64 (1:2.32-1) ...
Setting up libcap2-bin (1:2.32-1) ...
Setting up xz-utils (5.2.4-1ubuntu1.1) ...
update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/lzma.1.gz because associated file /usr/share/man/man1/xz.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/unlzma.1.gz because associated file /usr/share/man/man1/unxz.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzcat.1.gz because associated file /usr/share/man/man1/xzcat.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzmore.1.gz because associated file /usr/share/man/man1/xzmore.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzless.1.gz because associated file /usr/share/man/man1/xzless.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzdiff.1.gz because associated file /usr/share/man/man1/xzdiff.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzcmp.1.gz because associated file /usr/share/man/man1/xzcmp.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzgrep.1.gz because associated file /usr/share/man/man1/xzgrep.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzegrep.1.gz because associated file /usr/share/man/man1/xzegrep.1.gz (of link group lzma) doesn't exist
update-alternatives: warning: skip creation of /usr/share/man/man1/lzfgrep.1.gz because associated file /usr/share/man/man1/xzfgrep.1.gz (of link group lzma) doesn't exist
Setting up libmnl0:arm64 (1.0.4-2) ...
Setting up git (1:2.25.1-1ubuntu3.5) ...
Setting up libxtables12:arm64 (1.8.4-3ubuntu2) ...
Setting up libmpdec2:arm64 (2.4.2-3) ...
Setting up libbsd0:arm64 (0.10.0-1) ...
Setting up libelf1:arm64 (0.176-1.1build1) ...
Setting up libpam-cap:arm64 (1:2.32-1) ...
Setting up readline-common (8.0-4) ...
Setting up iproute2 (5.5.0-1ubuntu1) ...
Setting up libreadline8:arm64 (8.0-4) ...
Setting up libpython3.8-stdlib:arm64 (3.8.10-0ubuntu120.04.5) ...
Setting up python3.8 (3.8.10-0ubuntu120.04.5) ...
Setting up libpython3-stdlib:arm64 (3.8.2-0ubuntu2) ...
Setting up python3 (3.8.2-0ubuntu2) ...
Setting up lsb-release (11.1.0ubuntu2) ...
Processing triggers for libc-bin (2.31-0ubuntu9.9) ...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
--> 40475d70b9e
STEP 6/11: ENV DEBIAN_FRONTEND=dialog
--> 183f75f8e2b
STEP 7/11: RUN mkdir "$pandas_home" && git clone "https://github.com/$gh_username/pandas.git" "$pandas_home" && cd "$pandas_home" && git remote add upstream "https://github.com/pandas-dev/pandas.git" && git pull upstream main
Cloning into '/home/pandas'...
From https://github.com/pandas-dev/pandas

  • branch main -> FETCH_HEAD
  • [new branch] main -> upstream/main
    Already up to date.
    --> 7641e55fc38
    STEP 8/11: RUN conda install -y mamba
    Collecting package metadata (current_repodata.json): ...working... done
    Solving environment: ...working...
    The environment is inconsistent, please check the package plan carefully
    The following packages are causing the inconsistency:
  • conda-forge/linux-aarch64::brotlipy==0.7.0=py39h0fd3b05_1004
  • conda-forge/linux-aarch64::certifi==2022.5.18.1=py39h4420490_0
  • conda-forge/linux-aarch64::cffi==1.15.0=py39hab139ec_0
  • conda-forge/noarch::charset-normalizer==2.0.12=pyhd8ed1ab_0
  • conda-forge/noarch::colorama==0.4.4=pyh9f0ad1d_0
  • conda-forge/linux-aarch64::conda==4.12.0=py39h4420490_0
  • conda-forge/linux-aarch64::conda-package-handling==1.8.1=py39h0fd3b05_1
  • conda-forge/linux-aarch64::cryptography==37.0.2=py39h32042e6_0
  • conda-forge/noarch::idna==3.3=pyhd8ed1ab_0
  • conda-forge/noarch::pip==22.1.2=pyhd8ed1ab_0
  • conda-forge/linux-aarch64::pycosat==0.6.3=py39h0fd3b05_1010
  • conda-forge/noarch::pycparser==2.21=pyhd8ed1ab_0
  • conda-forge/noarch::pyopenssl==22.0.0=pyhd8ed1ab_0
  • conda-forge/linux-aarch64::pysocks==1.7.1=py39ha65689a_5
  • conda-forge/linux-aarch64::python==3.9.13=h2eada40_0_cpython
  • conda-forge/linux-aarch64::python_abi==3.9=2_cp39
  • conda-forge/linux-aarch64::readline==8.1=h1a49cc3_0
  • conda-forge/noarch::requests==2.27.1=pyhd8ed1ab_0
  • conda-forge/linux-aarch64::ruamel_yaml==0.15.80=py39h0fd3b05_1007
  • conda-forge/linux-aarch64::setuptools==62.3.2=py39ha65689a_0
  • conda-forge/noarch::six==1.16.0=pyh6c4a22f_0
  • conda-forge/linux-aarch64::sqlite==3.38.5=hc74f5b8_0
  • conda-forge/noarch::tqdm==4.64.0=pyhd8ed1ab_0
  • conda-forge/noarch::urllib3==1.26.9=pyhd8ed1ab_0
  • conda-forge/noarch::wheel==0.37.1=pyhd8ed1ab_0
    done

==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 4.13.0

Please update conda by running

$ conda update -n base conda

Package Plan

environment location: /opt/conda

added / updated specs:
- mamba

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
c-ares-1.18.1              |       hf897c2e_0         118 KB  conda-forge
ca-certificates-2022.6.15  |       h4fd8a4c_0         149 KB  conda-forge
icu-70.1                   |       ha18d298_0        13.6 MB  conda-forge
keyutils-1.6.1             |       h4e544f5_0         110 KB  conda-forge
krb5-1.19.3                |       h7c456eb_0         1.6 MB  conda-forge
libarchive-3.5.2           |       h610d84a_3         1.9 MB  conda-forge
libcurl-7.83.1             |       h8fd98b7_0         355 KB  conda-forge
libedit-3.1.20191231       |       he28a2e2_2         131 KB  conda-forge
libev-4.33                 |       h516909a_1         103 KB  conda-forge
libiconv-1.16              |       h6dd45c4_0         1.4 MB  conda-forge
libmamba-0.24.0            |       h8683862_1         1.6 MB  conda-forge
libmambapy-0.24.0          |   py39hdaab871_1         275 KB  conda-forge
libnghttp2-1.47.0          |       h75cb1c7_0         961 KB  conda-forge
libsolv-0.7.22             |       h7866ba4_0         455 KB  conda-forge
libssh2-1.10.0             |       h1ab2c7b_2         246 KB  conda-forge
libstdcxx-ng-12.1.0        |      hd01590b_16         4.2 MB  conda-forge
libxml2-2.9.14             |       h370961a_3         850 KB  conda-forge
lz4-c-1.9.3                |       h01db608_1         199 KB  conda-forge
lzo-2.10                   |    h516909a_1000         276 KB  conda-forge
mamba-0.24.0               |   py39hc9db4b5_1          46 KB  conda-forge
openssl-1.1.1q             |       h4e544f5_0         2.1 MB  conda-forge
pybind11-abi-4             |       hd8ed1ab_3          10 KB  conda-forge
readline-8.1.2             |       h38e3740_0         305 KB  conda-forge
reproc-14.2.3              |       hf897c2e_0          29 KB  conda-forge
reproc-cpp-14.2.3          |       h01db608_0          20 KB  conda-forge
yaml-cpp-0.7.0             |       h4de3ea5_1         205 KB  conda-forge
zstd-1.5.2                 |       haad177d_2         446 KB  conda-forge
------------------------------------------------------------
                                       Total:        31.6 MB

The following NEW packages will be INSTALLED:

c-ares conda-forge/linux-aarch64::c-ares-1.18.1-hf897c2e_0
icu conda-forge/linux-aarch64::icu-70.1-ha18d298_0
keyutils conda-forge/linux-aarch64::keyutils-1.6.1-h4e544f5_0
krb5 conda-forge/linux-aarch64::krb5-1.19.3-h7c456eb_0
libarchive conda-forge/linux-aarch64::libarchive-3.5.2-h610d84a_3
libcurl conda-forge/linux-aarch64::libcurl-7.83.1-h8fd98b7_0
libedit conda-forge/linux-aarch64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-aarch64::libev-4.33-h516909a_1
libiconv conda-forge/linux-aarch64::libiconv-1.16-h6dd45c4_0
libmamba conda-forge/linux-aarch64::libmamba-0.24.0-h8683862_1
libmambapy conda-forge/linux-aarch64::libmambapy-0.24.0-py39hdaab871_1
libnghttp2 conda-forge/linux-aarch64::libnghttp2-1.47.0-h75cb1c7_0
libsolv conda-forge/linux-aarch64::libsolv-0.7.22-h7866ba4_0
libssh2 conda-forge/linux-aarch64::libssh2-1.10.0-h1ab2c7b_2
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-12.1.0-hd01590b_16
libxml2 conda-forge/linux-aarch64::libxml2-2.9.14-h370961a_3
lz4-c conda-forge/linux-aarch64::lz4-c-1.9.3-h01db608_1
lzo conda-forge/linux-aarch64::lzo-2.10-h516909a_1000
mamba conda-forge/linux-aarch64::mamba-0.24.0-py39hc9db4b5_1
pybind11-abi conda-forge/noarch::pybind11-abi-4-hd8ed1ab_3
reproc conda-forge/linux-aarch64::reproc-14.2.3-hf897c2e_0
reproc-cpp conda-forge/linux-aarch64::reproc-cpp-14.2.3-h01db608_0
yaml-cpp conda-forge/linux-aarch64::yaml-cpp-0.7.0-h4de3ea5_1
zstd conda-forge/linux-aarch64::zstd-1.5.2-haad177d_2

The following packages will be UPDATED:

ca-certificates 2022.5.18.1-h4fd8a4c_0 --> 2022.6.15-h4fd8a4c_0
openssl 1.1.1o-h4e544f5_0 --> 1.1.1q-h4e544f5_0
readline 8.1-h1a49cc3_0 --> 8.1.2-h38e3740_0

Downloading and Extracting Packages
libcurl-7.83.1 | 355 KB | ########## | 100%
mamba-0.24.0 | 46 KB | ########## | 100%
libssh2-1.10.0 | 246 KB | ########## | 100%
krb5-1.19.3 | 1.6 MB | ########## | 100%
ca-certificates-2022 | 149 KB | ########## | 100%
readline-8.1.2 | 305 KB | ########## | 100%
libarchive-3.5.2 | 1.9 MB | ########## | 100%
reproc-cpp-14.2.3 | 20 KB | ########## | 100%
libxml2-2.9.14 | 850 KB | ########## | 100%
libedit-3.1.20191231 | 131 KB | ########## | 100%
reproc-14.2.3 | 29 KB | ########## | 100%
libiconv-1.16 | 1.4 MB | ########## | 100%
libstdcxx-ng-12.1.0 | 4.2 MB | ########## | 100%
pybind11-abi-4 | 10 KB | ########## | 100%
libnghttp2-1.47.0 | 961 KB | ########## | 100%
libmamba-0.24.0 | 1.6 MB | ########## | 100%
libmambapy-0.24.0 | 275 KB | ########## | 100%
lz4-c-1.9.3 | 199 KB | ########## | 100%
zstd-1.5.2 | 446 KB | ########## | 100%
keyutils-1.6.1 | 110 KB | ########## | 100%
libsolv-0.7.22 | 455 KB | ########## | 100%
yaml-cpp-0.7.0 | 205 KB | ########## | 100%
c-ares-1.18.1 | 118 KB | ########## | 100%
libev-4.33 | 103 KB | ########## | 100%
openssl-1.1.1q | 2.1 MB | ########## | 100%
icu-70.1 | 13.6 MB | ########## | 100%
lzo-2.10 | 276 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
--> 25c13e33a05
STEP 9/11: RUN mamba env update -n base -f "$pandas_home/environment.yml"
Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies. Conda may not use the correct pip to install your packages, and they may end up in the wrong place. Please add an explicit pip dependency. I'm adding one for you, but still nagging you.

Looking for: ['pip', 'python=3.8', 'cython=0.29.30', "pytest[version='>=6.0']", 'pytest-cov', "pytest-xdist[version='>=1.31']", 'psutil', "pytest-asyncio[version='>=0.17']", 'boto3', 'python-dateutil', 'numpy', 'pytz', 'beautifulsoup4', 'blosc', 'brotlipy', 'bottleneck', 'fastparquet', 'fsspec', 'html5lib', 'hypothesis', 'gcsfs', 'jinja2', 'lxml', 'matplotlib', "numba[version='>=0.53.1']", "numexpr[version='>=2.8.0']", 'openpyxl', 'odfpy', 'pandas-gbq', 'psycopg2', 'pyarrow', 'pymysql', 'pyreadstat', 'pytables', 'python-snappy', 'pyxlsb', 's3fs', 'scipy', 'sqlalchemy', 'tabulate', 'xarray', 'xlrd', 'xlsxwriter', 'xlwt', 'zstandard', "aiobotocore[version='<2.0.0']", 'botocore', 'cftime', 'dask', 'ipython', 'geopandas-base', 'seaborn', 'scikit-learn', 'statsmodels', 'coverage', 'pandas-datareader', 'pyyaml', 'py', 'pytorch', 'moto', 'flask', 'asv', 'c-compiler', 'cxx-compiler', 'black=22.3.0', 'cpplint', 'flake8=4.0.1', 'flake8-bugbear=21.3.2', 'flake8-comprehensions=3.7.0', "isort[version='>=5.2.1']", 'mypy=0.960', "pre-commit[version='>=2.15.0']", 'pycodestyle', 'pyupgrade', 'gitpython', 'gitdb', 'natsort', 'numpydoc', 'pandas-dev-flaker=0.5.0', 'pydata-sphinx-theme=0.8.0', 'pytest-cython', 'sphinx', 'sphinx-panels', 'types-python-dateutil', 'types-pymysql', 'types-pytz', 'types-setuptools', "nbconvert[version='>=6.4.5']", 'nbsphinx', 'pandoc', 'ipywidgets', 'nbformat', "notebook[version='>=6.0.3']", 'ipykernel', 'jinja2', 'markdown', 'feedparser', 'pyyaml', 'requests', "jupyterlab[version='>=3.4,<4']"]

Encountered problems while solving:

  • nothing provides requested pytorch

Error: error building at STEP "RUN mamba env update -n base -f "$pandas_home/environment.yml"": error while running runtime: exit status 1
@jmg-duarte jmg-duarte added Build Library building on various platforms Needs Triage Issue that has not been reviewed by a pandas team member labels Jul 15, 2022
@jmg-duarte jmg-duarte changed the title BUILD: cannot install from source using Docker not Podman BUILD: install from source fails using Docker not Podman (nothing provides requested pytorch) Jul 15, 2022
@jmg-duarte jmg-duarte mentioned this issue Jul 15, 2022
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@mroeschke mroeschke removed the Needs Triage Issue that has not been reviewed by a pandas team member label Aug 11, 2022
@MarcoGorelli
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pytorch isn't in the environment.yml file anymore, so I think we can close this

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