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oa_manual.py
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# -*- coding: utf-8 -*-
from collections import defaultdict
from sqlalchemy.dialects.postgresql import JSONB
from sqlalchemy import func
from app import db
import oa_evidence
from util import normalize_doi
class OAManual(db.Model):
__tablename__ = 'oa_manual'
id = db.Column(db.Integer, primary_key=True)
doi = db.Column(db.Text, unique=True)
response_jsonb = db.Column(JSONB)
def get_override_dict(pub):
overrides_dict = get_overrides_dict()
db_overrides_dict = db.session.query(OAManual).filter(func.lower(OAManual.doi) == func.lower(pub.doi)).first()
if pub.doi in overrides_dict:
return overrides_dict[pub.doi]
elif db_overrides_dict:
return db_overrides_dict.response_jsonb
elif pub.issn_l == '0860-021X':
# Biology of Sport.
# ticket 995
# doi.org links resolve to biolsport.com, which is now possibly malicious
return {}
elif pub.issn_l == '2149-2980' and pub.best_host == 'publisher':
# Kosuyolu Heart Journal
# in DOAJ but doi.org links don't work
return {}
elif pub.issn_l == '2079-5696':
# ticket 22141
# Gynecology, doi.org links don't resolve
return {}
elif pub.issn_l in ['1642-5758', '0209-1712'] and pub.year and pub.year < 2016 and pub.best_host == 'publisher':
# ticket 22157
# Anestezjologia Intensywna Terapia. publisher changed but didn't update old DOIs
return {}
elif pub.issn_l == '1582-9596' and pub.best_host == 'publisher':
# ticket 22257
# Environmental Engineering and Management Journal, doi.org URLs lead to abstracts
return {}
elif pub.id == '10.1042/cs20200184' and pub.best_oa_location and '(via crossref license)' in pub.best_oa_location.evidence:
return {}
elif pub.id and pub.id.startswith('10.18267/pr.2019.los.186.'):
return {
"metadata_url": "https://msed.vse.cz/msed_2019/sbornik/toc.html",
"host_type_set": "publisher",
"version": "publishedVersion",
}
elif pub.issn_l == '1012-0254':
# gold journal, doi URLs are broken. ticket 22821
return {
'metadata_url': 'https://journals.co.za/doi/{}'.format(pub.id.upper()),
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via observed oa rate)',
}
elif pub.doi and pub.doi.startswith('10.1002/9781119237211.'):
return {}
else:
return None
# things to set here:
# license, free_metadata_url, free_pdf_url
# free_fulltext_url is set automatically from free_metadata_url and free_pdf_url
def get_overrides_dict():
override_dict = defaultdict(dict)
# cindy wu example
override_dict["10.1038/nature21360"] = {
"pdf_url": "https://arxiv.org/pdf/1703.01424.pdf",
"version": "submittedVersion",
"host_type_set": "repository",
"evidence": "oa repository (manual)"
}
# example from twitter
override_dict["10.1021/acs.jproteome.5b00852"] = {
"pdf_url": "http://pubs.acs.org/doi/pdfplus/10.1021/acs.jproteome.5b00852",
"host_type_set": "publisher",
"version": "publishedVersion"
}
# have the unpaywall example go straight to the PDF, not the metadata page
override_dict["10.1098/rspa.1998.0160"] = {
"pdf_url": "https://arxiv.org/pdf/quant-ph/9706064.pdf",
"version": "submittedVersion"
}
# missed, not in BASE, from Maha Bali in email
override_dict["10.1080/13562517.2014.867620"] = {
"pdf_url": "http://dar.aucegypt.edu/bitstream/handle/10526/4363/Final%20Maha%20Bali%20TiHE-PoD-Empowering_Sept30-13.pdf",
"version": "submittedVersion"
}
# otherwise links to figshare match that only has data, not the article
override_dict["110.1126/science.aaf3777"] = {}
#otherwise links to a metadata page that doesn't have the PDF because have to request a copy: https://openresearch-repository.anu.edu.au/handle/1885/103608
override_dict["10.1126/science.aad2622"] = {
"pdf_url": "https://lra.le.ac.uk/bitstream/2381/38048/6/Waters%20et%20al%20draft_post%20review_v2_clean%20copy.pdf",
"version": "submittedVersion"
}
# otherwise led to http://www.researchonline.mq.edu.au/vital/access/services/Download/mq:39727/DS01 and authorization error
override_dict["10.1126/science.aad2622"] = {}
# else goes here: http://www.it-c.dk/people/schmidt/papers/complexity.pdf
override_dict["10.1007/978-1-84800-068-1_9"] = {}
# otherwise led to https://dea.lib.unideb.hu/dea/bitstream/handle/2437/200488/file_up_KMBT36220140226131332.pdf;jsessionid=FDA9F1A60ACA567330A8B945208E3CA4?sequence=1
override_dict["10.1007/978-3-211-77280-5"] = {}
# otherwise led to publisher page but isn't open
override_dict["10.1016/j.renene.2015.04.017"] = {}
# override old-style webpage
override_dict["10.1210/jc.2016-2141"] = {
"pdf_url": "https://academic.oup.com/jcem/article-lookup/doi/10.1210/jc.2016-2141",
"host_type_set": "publisher",
"version": "publishedVersion",
}
# not indexing this location yet, from @rickypo
override_dict["10.1207/s15327957pspr0203_4"] = {
"pdf_url": "http://www2.psych.ubc.ca/~schaller/528Readings/Kerr1998.pdf",
"version": "submittedVersion"
}
# mentioned in world bank as good unpaywall example
override_dict["10.3386/w23298"] = {
"pdf_url": "https://economics.mit.edu/files/12774",
"version": "submittedVersion"
}
# from email, has bad citesserx cached version
override_dict["10.1007/bf02693740"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.536.6939&rep=rep1&type=pdf",
"version": "publishedVersion"
}
# from email, has bad citesserx cached version
override_dict["10.1126/science.1150952"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.168.3796&rep=rep1&type=pdf",
"version": "submittedVersion",
"host_type_set": "repository"
}
# from email, has bad citesserx cached version
override_dict["10.1515/eqc.2007.295"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.543.7752&rep=rep1&type=pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1038/nature21377"] = {
"pdf_url": "http://eprints.whiterose.ac.uk/112179/1/ppnature21377_Dodd_for%20Symplectic.pdf",
"version": "submittedVersion"
}
# from email
override_dict["10.1016/j.gtc.2016.09.007"] = {
"pdf_url": "https://cora.ucc.ie/bitstream/handle/10468/3544/Quigley_Chapter.pdf?sequence=1&isAllowed=y",
"version": "acceptedVersion"
}
# stephen hawking's thesis
override_dict["10.17863/cam.11283"] = {
"pdf_url": "https://www.repository.cam.ac.uk/bitstream/handle/1810/251038/PR-PHD-05437_CUDL2017-reduced.pdf?sequence=15&isAllowed=y",
"version": "publishedVersion"
}
# from email
override_dict["10.1152/advan.00040.2005"] = {
"pdf_url": "https://www.physiology.org/doi/pdf/10.1152/advan.00040.2005",
"version": "publishedVersion"
}
# from email
override_dict["10.1016/j.chemosphere.2014.07.047"] = {
"pdf_url": "https://manuscript.elsevier.com/S0045653514009102/pdf/S0045653514009102.pdf",
"version": "submittedVersion"
}
# from email
override_dict["10.4324/9780203900956"] = {}
# from email
override_dict["10.3810/psm.2010.04.1767"] = {
"pdf_url": "http://cupola.gettysburg.edu/cgi/viewcontent.cgi?article=1014&context=healthfac",
"version": "publishedVersion"
}
# from email
override_dict["10.1016/S0140-6736(17)33308-1"] = {
"pdf_url": "https://www.rug.nl/research/portal/files/64097453/Author_s_version_Gonadotrophins_versus_clomiphene_citrate_with_or_without_intrauterine_insemination_in_women.pdf",
"version": "acceptedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1093/joclec/nhy009"] = {
"pdf_url": "https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3126848",
"host_type_set": "repository"
}
# from email
override_dict["10.1038/s41477-017-0019-3"] = {
"pdf_url": "https://www.repository.cam.ac.uk/bitstream/handle/1810/270235/3383_1_merged_1502805167.pdf?sequence=1&isAllowed=y",
"version": "acceptedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1029/wr015i006p01633"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.475.497&rep=rep1&type=pdf",
"version": "publishedVersion"
}
# from email, zenodo
override_dict["10.1080/01650521.2018.1460931"] = {
"metadata_url": "https://zenodo.org/record/1236622",
"host_type_set": "repository",
"version": "acceptedVersion"
}
# from email
override_dict["10.3928/01477447-20150804-53"] = {}
# from twitter
override_dict["10.1103/physreva.97.013421"] = {
"pdf_url": "https://arxiv.org/pdf/1711.10074.pdf",
"version": "submittedVersion"
}
# from email
override_dict["10.1016/j.amjmed.2005.09.031"] = {
"pdf_url": "https://www.amjmed.com/article/S0002-9343(05)00885-5/pdf",
"version": "publishedVersion"
}
# from email
override_dict["10.1080/15348458.2017.1327816"] = {}
# from chorus
override_dict["10.1103/physrevd.94.052011"] = {
"pdf_url": "https://link.aps.org/accepted/10.1103/PhysRevD.94.052011",
"version": "acceptedVersion",
}
override_dict["10.1063/1.4962501"] = {
"pdf_url": "https://aip.scitation.org/doi/am-pdf/10.1063/1.4962501",
"version": "acceptedVersion",
"host_type_set": "repository"
}
# from email, broken citeseer link
override_dict["10.2202/1949-6605.1908"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.535.9289&rep=rep1&type=pdf",
"version": "publishedVersion"
}
# from email
override_dict["10.1561/1500000012"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.174.8814&rep=rep1&type=pdf",
"version": "publishedVersion"
}
# from email
override_dict["10.1137/s0036142902418680"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.144.7627&rep=rep1&type=pdf",
"version": "publishedVersion"
}
# from email
override_dict["10.1088/1741-2552/aab4e4"] = {
"pdf_url": "http://iopscience.iop.org/article/10.1088/1741-2552/aab4e4/pdf",
"version": "publishedVersion"
}
# from email
override_dict["10.1145/1031607.1031615"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.540.8125&rep=rep1&type=pdf",
"version": "publishedVersion"
}
# from email
override_dict["10.1007/s11227-016-1779-7"] = {
"pdf_url": "https://hcl.ucd.ie/system/files/TJS-Hasanov-2016.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1016/s0020-0190(03)00351-x"] = {
"pdf_url": "https://kam.mff.cuni.cz/~kolman/papers/noteb.ps",
"version": "submittedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1002/14651858.cd001704.pub4"] = {
"pdf_url": "https://core.ac.uk/download/pdf/9440822.pdf",
"version": "submittedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1016/j.tetlet.2015.04.131"] = {
"pdf_url": "https://www.sciencedirect.com/sdfe/pdf/download/read/aam/noindex/pii/S0040403915007881",
"version": "acceptedVersion",
"host_type_set": "publisher"
}
# from email
override_dict["10.1016/j.nima.2016.04.104"] = {
"pdf_url": "http://cds.cern.ch/record/2239750/files/1-s2.0-S0168900216303400-main.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1056/NEJM199406233302502"] = {
"pdf_url": "https://www.nejm.org/doi/full/10.1056/NEJM199406233302502",
"version": "publishedVersion",
"host_type_set": "publisher"
}
# from email
override_dict["10.1056/NEJMra1201534"] = {
"pdf_url": "https://www.nejm.org/doi/pdf/10.1056/NEJMra1201534",
"version": "publishedVersion",
"host_type_set": "publisher"
}
# from email
override_dict["10.1016/j.cmet.2018.03.012"] = {
"pdf_url": "https://www.biorxiv.org/content/biorxiv/early/2018/01/15/245332.full.pdf",
"version": "submittedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1093/sf/65.1.1"] = {
"pdf_url": "https://faculty.washington.edu/charles/new%20PUBS/A52.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1088/1751-8121/aabd9c"] = {}
# from email
override_dict["10.1017/CBO9781139173728.002"] = {}
# from email
override_dict["10.2174/97816810846711170101"] = {}
# from email
override_dict["10.1177/1354066196002003001"] = {}
# from email
override_dict["10.1093/bioinformatics/bty721"] = {}
# from email
override_dict["10.1088/1361-6528/aac7a4"] = {}
# from email
override_dict["10.1088/1361-6528/aac645"] = {}
# from email
override_dict["10.1111/1748-8583.12159"] = {}
# from email
override_dict["10.1042/BJ20080963"] = {}
# from email
override_dict["10.1136/bmj.j5007"] = {}
# from email
override_dict["10.1016/j.phrs.2017.12.007"] = {}
# from email
override_dict["10.4324/9781315770185"] = {}
# from email
override_dict["10.1108/PIJPSM-02-2016-0019"] = {}
# from email
override_dict["10.1016/j.ejca.2017.07.015"] = {}
# from email
override_dict["10.1080/14655187.2017.1469322"] = {}
# from email
override_dict["10.1080/02684527.2017.1407549"] = {}
# from email
override_dict["10.1093/jat/bky025"] = {}
# from email
override_dict["10.1016/j.midw.2009.07.004"] = {}
# from email
override_dict["10.1177/247553031521a00105"] = {}
# from email
override_dict["10.1002/0471445428"] = {}
# from email
override_dict["10.1007/978-3-642-31232-8"] = {}
# ticket 267
override_dict["10.1016/j.anucene.2014.08.021"] = {}
# ticket 199
# pdf has embedded password protection
override_dict["10.22381/rcp1720184"] = {}
# ticket 574
# pdf has embedded password protection
override_dict["10.22381/EMFM14220195"] = {}
# ticket 256
# journal in doaj but article not available
override_dict["10.1016/j.mattod.2018.03.001"] = {}
# ticket 277
# pmh record with spurious title: oai:works.swarthmore.edu:fac-psychology-1039
override_dict["10.1016/j.actpsy.2010.01.009"] = {}
# ticket 280
# green scrape gets overexcited about a .doc link
override_dict["10.1108/09596111211217932"] = {}
# ticket 279
# match to wrong pdf, currently suppressed incorrectly by bad pdf check
override_dict["10.1238/physica.topical.102a00059"] = {}
# ticket 275
override_dict["10.1039/c7nj03253f"] = {}
# email
override_dict['10.1007/978-3-642-30350-0'] = {}
# ticket 135
# bad title / last author match
override_dict["10.1016/s0140-6736(17)31287-4"] = {}
# ticket 98
# two similar articles with this title
override_dict["10.1002/14651858.CD012414.pub2"] = {}
# ticket 322
# pmh match on a cover sheet
override_dict["10.1116/1.5046531"] = {}
# ticket 631
# withdrawn article
override_dict["10.5812/jjm.3664"] = {}
# ticket 832
override_dict["10.5935/scd1984-8773.20168409"] = {}
# ticket 1047
# book chapter has a bronze tag
override_dict["10.1002/9781119473992"] = {}
# from email
override_dict["10.1016/S0022-1996(00)00093-3"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.475.3874&rep=rep1&type=pdf",
"version": "submittedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1177/088840649401700203"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.1014.8577&rep=rep1&type=pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.7326/L18-0139"] = {
"pdf_url": "http://annals.org/data/journals/aim/936928/aime201804170-l180139.pdf",
"version": "publishedVersion",
"host_type_set": "publisher"
}
# from email
override_dict["10.1007/978-3-319-48881-3_55"] = {
"pdf_url": "http://liu.diva-portal.org/smash/get/diva2:1063949/FULLTEXT01.pdf",
"version": "acceptedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1109/ICCVW.2015.86"] = {
"pdf_url": "http://liu.diva-portal.org/smash/get/diva2:917646/FULLTEXT01",
"version": "acceptedVersion",
"host_type_set": "repository"
}
# from email
override_dict["10.1109/tpds.2012.97"] = {
"pdf_url": "https://www.cnsr.ictas.vt.edu/publication/06171175.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# ticket 261
# crossref metadata points to wrong article
override_dict["10.4149/BLL_2013_058"] = {
"pdf_url": "http://www.elis.sk/download_file.php?product_id=3759&session_id=lnkeo437s8hv5t0r28g6ku93b0",
"version": "publishedVersion",
"host_type_set": "publisher"
}
# ticket 317
# broken link on citeseer
override_dict["10.1016/b978-1-55860-307-3.50012-5"] = {
"pdf_url": "http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.57.3196&rep=rep1&type=pdf",
"version": "submittedVersion",
"host_type_set": "repository"
}
# ticket 195
# wrong registered landing page
override_dict["10.21285/2227-2925-2018-8-2-9-18"] = {
"metadata_url": "http://journals.istu.edu/izvestia_biochemi/journals/2018/02/articles/01",
"version": "publishedVersion",
"host_type_set": "publisher",
"evidence": oa_evidence.oa_journal_doaj
}
# ticket 213
# journal issue is open
override_dict["10.14195/2182-7982_32"] = {
"metadata_url": "https://doi.org/10.14195/2182-7982_32",
"version": "publishedVersion",
"host_type_set": "publisher"
}
override_dict["10.1016/S2213-8587(16)30320-5"] = {
"pdf_url": "http://www.spdm.org.pt/media/1373/pku-guidelines_2017.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# ticket 433
override_dict["10.1144/GSL.JGS.1846.002.01-02.54"] = {
"metadata_url": "https://www.biodiversitylibrary.org/item/109652#page/473/mode/1up",
"version": "publishedVersion",
"host_type_set": "repository"
}
# ticket 223
# pme record has wrong page url
override_dict["10.1002/abc.207"] = {
"pdf_url": "https://repository.library.northeastern.edu/files/neu:344561/fulltext.pdf",
"metadata_url": "https://repository.library.northeastern.edu/files/neu:344561",
"version": "submittedVersion",
"host_type_set": "repository"
}
# ticket 304
# inline citation pdf links
override_dict["10.7766/alluvium.v3.1.05"] = {
"metadata_url": "https://doi.org/10.7766/alluvium.v3.1.05",
"version": "publishedVersion",
"host_type_set": "publisher"
}
# ticket 376
override_dict["10.1080/01639374.2017.1358232"] = {
"pdf_url": "https://groups.niso.org/apps/group_public/download.php/17446/Understanding%20Metadata.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# ticket 539
# malformed url in pmh record
override_dict["10.1642/0004-8038(2007)124[1121:EOWNVT]2.0.CO;2"] = {
"pdf_url": "https://repository.si.edu/bitstream/handle/10088/35181/NZP_Marra_2007-ECOLOGY_OF_WEST_NILE_VIRUS_TRANSMISSION_AND_ITS_IMPACT_ON_BIRDS_IN_THE_WESTERN_HEMISPHERE.pdf",
"version": "publishedVersion",
"host_type_set": "repository"
}
# https://github.com/Impactstory/unpaywall/issues/41
# link to preprint with different DOI
override_dict["10.1038/s41592-018-0235-4"] = {
"metadata_url": "https://www.biorxiv.org/content/10.1101/306951v3",
"pdf_url": "https://www.biorxiv.org/content/biorxiv/early/2018/07/24/306951.full.pdf",
"version": "submittedVersion",
"host_type_set": "repository"
}
# issue 530
# unrelated pmh record has wrong DOI
override_dict["10.1056/nejmoa063842"] = {
"metadata_url": "https://www.nejm.org/doi/10.1056/NEJMoa063842",
"version": "publishedVersion",
"host_type_set": "publisher"
}
# issue 571
# scrape finds supplementary file
override_dict["10.21203/rs.2.11958/v1"] = {
"metadata_url": "https://doi.org/10.21203/rs.2.11958/v1",
"version": "submittedVersion",
"host_type_set": "repository",
"license": "cc-by"
}
# twitter
override_dict['10.1002/jclp.22680'] = {
'pdf_url': 'https://dl.uswr.ac.ir/bitstream/Hannan/62873/1/2018%20JCpsychology%20Volume%2074%20Issue%2011%20November%20%2811%29.pdf',
'version': 'publishedVersion',
'host_type_set': 'repository',
}
# ticket 680
override_dict['10.17059/2015-4-27'] = {
'metadata_url': 'http://economyofregion.com/archive/2015/57/2731/',
'pdf_url': 'http://economyofregion.com/archive/2015/57/2731/pdf/',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 681
override_dict['10.17059/2016-1-19'] = {
'metadata_url': 'http://economyofregion.com/archive/2016/58/2778/',
'pdf_url': 'http://economyofregion.com/archive/2016/58/2778/pdf/',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 743
override_dict['10.1016/S0140-6736(07)61162-3'] = {
'metadata_url': 'https://www.semanticscholar.org/paper/Cannabis-use-and-risk-of-psychotic-or-aff-ective-a-Moore-Zammit/6e5bc8bf7814c62db319632ca939ad68a6770d1b',
'pdf_url': 'https://pdfs.semanticscholar.org/641e/6aba769421d4308d1ad107684eeca7f687d1.pdf',
'version': 'publishedVersion',
'host_type_set': 'repository',
}
# ticket 835
override_dict['10.23912/9781911396512-3454'] = {
'metadata_url': 'https://doi.org/10.23912/9781911396512-3454',
'pdf_url': 'https://www.goodfellowpublishers.com/academic-publishing.php?promoCode=&partnerID=&housekeeping=getfile&productID=3657',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 899, missing from IR
override_dict['10.1080/0361526x.2019.1551004'] = {
'metadata_url': 'https://inspire.redlands.edu/oh_articles/249/',
'pdf_url': 'https://inspire.redlands.edu/cgi/viewcontent.cgi?article=1190&context=oh_articles',
'version': 'publishedVersion',
'host_type_set': 'repository',
'license': 'cc-by-nc',
}
# ticket 1029, can't detect PDF
override_dict['10.1891/2156-5287.8.4.252'] = {
'metadata_url': 'https://doi.org/10.1891/2156-5287.8.4.252',
'pdf_url': 'https://connect.springerpub.com/content/sgrijc/8/4/252.full.pdf',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 1057, full issue pdf found first but has errors
override_dict['10.5152/turkjnephrol.2020.3579'] = {
'metadata_url': 'https://doi.org/10.5152/turkjnephrol.2020.3579',
'pdf_url': 'https://turkjnephrol.org/Content/files/sayilar/420/84-88(2).pdf',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 1064, doi.org/10.1016/j.jcmg.2012.07.005 redirects to 10.1016/j.jcmg.2012.08.001
override_dict['10.1016/j.jcmg.2012.07.005'] = {
'metadata_url': 'https://www.sciencedirect.com/science/article/pii/S1936878X12005748',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 1084 faculty page
override_dict['10.1016/j.jebo.2012.09.021'] = {
'pdf_url': 'https://cpb-us-w2.wpmucdn.com/sites.wustl.edu/dist/c/2014/files/2019/06/tennis.pdf',
'version': 'submittedVersion',
'host_type_set': 'repository',
}
# ticket 1118, can't read landing page
override_dict['10.3917/zil.006.0009'] = {
'metadata_url': 'https://doi.org/10.3917/zil.006.0009',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 1151, doi.org url 404
override_dict['10.1001/jamafacial.2013.406'] = {
'metadata_url': 'https://www.liebertpub.com/doi/10.1001/archfaci.2013.406',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
#ticket 1152, doi.org url leads to wrong article
override_dict['10.1016/j.aott.2018.06.004'] = {
'metadata_url': 'https://www.aott.org.tr/en/comparison-of-ultrasound-and-extracorporeal-shock-wave-therapy-in-lateral-epicondylosis-133459',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
'license': 'cc-by-nc-nd',
}
#ticket 1162, can't download PDF
override_dict['10.3406/ahess.1976.293748'] = {
'metadata_url': 'https://www.persee.fr/doc/ahess_0395-2649_1976_num_31_4_293748',
'version': 'publishedVersion',
'host_type_set': 'repository',
'license': 'cc-by-nc-sa',
}
#ticket 1184, missing from philarchive
override_dict['10.1007/s10670-020-00241-4'] = {
'metadata_url': 'https://philarchive.org/rec/LOGIAI',
'pdf_url': 'https://philarchive.org/archive/LOGIAI',
'version': 'acceptedVersion',
'host_type_set': 'repository',
}
override_dict['10.1007/s11098-019-01378-x'] = {
'metadata_url': 'https://philarchive.org/rec/LOGTST',
'pdf_url': 'https://philarchive.org/archive/LOGTST',
'version': 'acceptedVersion',
'host_type_set': 'repository',
}
override_dict['10.1002/tht3.395'] = {
'metadata_url': 'https://philarchive.org/rec/LOGSUR',
'pdf_url': 'https://philarchive.org/archive/LOGSUR',
'version': 'publishedVersion',
'host_type_set': 'repository',
}
override_dict['10.3917/lig.764.0006'] = {
'metadata_url': 'https://doi.org/10.3917/lig.764.0006',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 1260, wrong doi url
override_dict['10.5603/ait.a2017.0053'] = {
'metadata_url': 'https://www.termedia.pl/Pharmacokinetic-drug-drug-interactions-in-the-intensive-care-unit-single-centre-experience-and-literature-review,118,38092,1,1.html',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22157, wrong doi url
override_dict['10.5603/ait.a2015.0073'] = {
'metadata_url': 'https://www.termedia.pl/Hemodynamic-monitoring-To-calibrate-or-not-to-calibrate-r-nPart-1-Calibrated-techniques,118,38312,0,1.html',
'pdf_url': 'https://www.termedia.pl/Journal/-118/pdf-38312-10?filename=pages_487-500_article_43713.pdf',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22157, wrong doi url
override_dict['10.5603/ait.a2015.0076'] = {
'metadata_url': 'https://www.termedia.pl/Hemodynamic-monitoring-To-calibrate-or-not-to-calibrate-r-nPart-2-Non-calibrated-techniques,118,38313,0,1.html',
'pdf_url': 'https://www.termedia.pl/Journal/-118/pdf-38313-10?filename=pages_501-516_article_43754.pdf',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 3417, wrong doi url
override_dict['10.15414/jmbfs.2016.5.special1.64-68'] = {
'metadata_url': 'https://www.jmbfs.org/issue/february-2016-vol-5-special-1/jmbfs-2016_020-ivanuska/?issue_id=4120&article_id=18',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 4625, wrong doi url
override_dict['10.4103/1011-4564.204985'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=37;epage=43;aulast=Huang;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_99_16'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=44;epage=49;aulast=Doka;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_95_16'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=50;epage=55;aulast=Hsu;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_104_16'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=56;epage=60;aulast=Lin;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_100_16'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=61;epage=68;aulast=Shen;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_12_16'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=69;epage=71;aulast=Chaitra;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_92_15'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=72;epage=75;aulast=Huang;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
override_dict['10.4103/jmedsci.jmedsci_27_16'] = {
'metadata_url': 'http://www.jmedscindmc.com/article.asp?issn=1011-4564;year=2017;volume=37;issue=2;spage=76;epage=79;aulast=Saha;type=0',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# end ticket 4625
# ticket 22137, doi url redirects to http, then https redirect fails
override_dict['10.18845/te.v1i2.868'] = {
'metadata_url': 'https://revistas.tec.ac.cr/index.php/tec_empresarial/article/view/868',
'pdf_url': 'https://revistas.tec.ac.cr/index.php/tec_empresarial/article/view/868',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22208. 404 at doi url
override_dict['10.26442/terarkh201890417-20'] = {
"host_type_set": "publisher",
"version": "publishedVersion",
"evidence": "oa journal (via doaj)",
"metadata_url": "https://ter-arkhiv.ru/0040-3660/article/view/32440",
"license": "cc-by",
}
# ticket 22274. gold journal but DOI doesn't resolve
override_dict['10.25251/skin.3.6.4'] = {
'metadata_url': 'https://jofskin.org/index.php/skin/article/view/625',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via observed oa rate)',
}
# ticket 22287. journal in DOAJ, but article missing from https://sophia.ups.edu.ec/index.php/sophia/issue/view/151
override_dict['10.17163/soph.n25.2018.03'] = {
'metadata_url': 'https://www.redalyc.org/jatsRepo/4418/441855948003/html/index.html',
'license': 'cc-by-nc-sa',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22562. journal in DOAJ, doi.org url 404s
override_dict['10.1162/itid.2003.1.1.75'] = {
'metadata_url': 'https://itidjournal.org/index.php/itid/article/view/136.html',
'pdf_url': 'https://itidjournal.org/index.php/itid/article/download/136/136-472-1-PB.pdf',
'license': 'cc-by-nc-sa',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22936. journal in DOAJ, doi.org url 404s, same article as above
override_dict['10.1162/154475203771799720'] = {
'metadata_url': 'https://itidjournal.org/index.php/itid/article/view/136.html',
'pdf_url': 'https://itidjournal.org/index.php/itid/article/download/136/136-472-1-PB.pdf',
'license': 'cc-by-nc-sa',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22674. doesn't want to link to PDF for some reason.
override_dict['10.1101/2020.02.24.962878'] = {
'metadata_url': 'https://doi.org/10.1101/2020.02.24.962878',
'version': 'submittedVersion',
'host_type_set': 'repository',
'evidence': 'oa repository (via free pdf)',
}
# ticket 22562. journal in DOAJ, broken doi.org url
override_dict['10.5505/tbdhd.2018.50251'] = {
'metadata_url': 'http://dergi.bdhd.org.tr/eng/jvi.aspx?un=TBDHD-50251&volume=24&issue=2',
'pdf_url': 'https://jag.journalagent.com/tbdhd/pdfs/TBDHD-50251-CASE_REPORT-YEKTAS.pdf',
'license': 'cc-by-nc-nd',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'evidence': 'oa journal (via doaj)',
}
# ticket 22877. journal was detected as all-OA but DOIs don't work now
override_dict['10.14800/scti.232'] = {
'metadata_url': 'https://www.smartscitech.com/index.php/SCTI/article/view/828',
'version': 'publishedVersion',
'host_type_set': 'publisher',
}
# ticket 22945. first citeseerx link broken
override_dict['10.1111/1467-8306.9302004'] = {
'metadata_url': 'https://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.109.1825',
'pdf_url': 'https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.109.1825&rep=rep1&type=pdf',
'version': 'submittedVersion',
'host_type_set': 'repository',
'evidence': 'oa repository (via free pdf)',
}
# ticket 22967. first citeseerx link is slide deck
override_dict['10.1109/msp.2010.936019'] = {
'metadata_url': 'http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.470.8283',
'pdf_url': 'http://www1.se.cuhk.edu.hk/~manchoso/papers/sdrapp-SPM.pdf',
'version': 'acceptedVersion',
'host_type_set': 'repository',
'evidence': 'oa repository (via free pdf)',
}
# ticket 23017. can't scrape cairn
override_dict['10.3917/sr.035.0007'] = {
'metadata_url': 'https://doi.org/10.3917/sr.035.0007',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'license': 'cc-by-nc-nd',
}
# ticket 23017. can't scrape cairn
override_dict['10.3917/sr.039.0119'] = {
'metadata_url': 'https://doi.org/10.3917/sr.039.0119',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'license': 'cc-by-nc-nd',
}
# ticket 23020
override_dict['10.3847/2041-8213/abe4de'] = {
'metadata_url': 'https://doi.org/10.3847/2041-8213/abe4de',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'license': 'cc-by',
}
# ticket 23020
override_dict['10.3847/2041-8213/abe71d'] = {
'metadata_url': 'https://doi.org/10.3847/2041-8213/abe71d',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'license': 'cc-by',
}
# ticket 23020
override_dict['10.3847/2041-8213/abed53'] = {
'metadata_url': 'https://doi.org/10.3847/2041-8213/abed53',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'license': 'cc-by',
}
# ticket 23020
override_dict['10.3847/2041-8213/abee6a'] = {
'metadata_url': 'https://doi.org/10.3847/2041-8213/abee6a',
'version': 'publishedVersion',
'host_type_set': 'publisher',
'license': 'cc-by',
}