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@scilus Sherbrooke Connectivity Imaging Lab

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    53 repositories

    • containers-scilus

      Public
      Files needed to build a container to run all scilus flows.
      Dockerfile
      •4•2•1•1•Updated Nov 26, 2024Nov 26, 2024

    • scilpy

      Public
      The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
      Python
      •
      Other
      •60•62•47•12•Updated Nov 26, 2024Nov 26, 2024

    • nf-pediatric

      Public
      nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.
      Nextflow
      •
      MIT License
      •1•2•1•0•Updated Nov 25, 2024Nov 25, 2024

    • nf-neuro

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •7•4•7•5•Updated Nov 25, 2024Nov 25, 2024

    • scilus_website

      Public
      SCIL website
      HTML
      •
      MIT License
      •6•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • Infant-DWI

      Public
      Complete pipeline to perform tractography from infant diffusion MRI data.
      Nextflow
      •
      MIT License
      •2•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • mouseflow_documentation

      Public
      Python
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • combine_flows

      Public
      Shell
      •6•0•1•2•Updated Nov 6, 2024Nov 6, 2024

    • neurogister

      Public
      Python
      •1•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • tractometry_flow

      Public
      Nextflow
      •12•0•0•1•Updated Nov 4, 2024Nov 4, 2024

    • dmriqcpy

      Public
      Diffusion MRI Quality Check in python
      JavaScript
      •
      MIT License
      •9•8•3•2•Updated Nov 4, 2024Nov 4, 2024

    • rbx_flow

      Public
      Nextflow
      •
      MIT License
      •9•2•0•0•Updated Nov 2, 2024Nov 2, 2024

    • scil-documentation

      Public
      Documentation for the SCIL
      Python
      •15•4•7•2•Updated Sep 26, 2024Sep 26, 2024

    • tractoflow

      Public
      TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
      Nextflow
      •
      Other
      •22•53•7•1•Updated Sep 23, 2024Sep 23, 2024

    • nf-scil

      Public
      SCIL Nextflow Toolbox
      Nextflow
      •
      GNU General Public License v3.0
      •16•1•6•6•Updated Sep 16, 2024Sep 16, 2024

    • freewater_flow

      Public
      Nextflow
      •
      MIT License
      •4•5•1•0•Updated Sep 12, 2024Sep 12, 2024

    • nft-nifti

      Public
      Java
      •
      MIT License
      •3•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • bst_flow

      Public
      Bundle Specific Tractography pipeline
      Nextflow
      •
      MIT License
      •3•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • freesurfer_flow

      Public
      Nextflow
      •
      MIT License
      •3•0•1•1•Updated Jul 8, 2024Jul 8, 2024

    • noddi_flow

      Public
      Nextflow
      •
      MIT License
      •1•0•0•1•Updated Jun 25, 2024Jun 25, 2024

    • .github

      Public
      0•0•0•0•Updated May 17, 2024May 17, 2024

    • atlas_arnold

      Public
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • connectoflow

      Public
      Nextflow
      •
      MIT License
      •5•3•3•0•Updated Jan 30, 2024Jan 30, 2024

    • tractometer_website

      Public
      HTML
      •
      MIT License
      •2•1•0•0•Updated Jan 23, 2024Jan 23, 2024

    • dmriqc_flow

      Public
      A Nextflow pipeline for diffusion MRI quality check
      Nextflow
      •
      MIT License
      •7•4•9•2•Updated Nov 24, 2023Nov 24, 2023

    • quactography

      Public
      Python
      •
      Apache License 2.0
      •5•1•1•2•Updated Nov 9, 2023Nov 9, 2023

    • tractoflow_documentation

      Public
      Documentation related files for tractoflow
      Python
      •6•0•2•0•Updated Nov 6, 2023Nov 6, 2023

    • extractor_flow

      Public
      Nextflow
      •1•2•0•1•Updated Oct 30, 2023Oct 30, 2023

    • register_flow

      Public
      Nextflow
      •1•1•1•1•Updated Oct 13, 2023Oct 13, 2023

    • hot_dipy

      Public
      DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
      Python
      •
      Other
      •440•0•0•0•Updated Oct 11, 2023Oct 11, 2023