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    • ColabFold

      Public
      Making Protein folding accessible to all!
      Jupyter Notebook
      MIT License
      504000Updated Oct 16, 2024Oct 16, 2024
    • Bayer's MLR antibody data modelling challenge
      Python
      1300Updated Sep 3, 2024Sep 3, 2024
    • Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠
      Python
      BSD 3-Clause "New" or "Revised" License
      02220Updated Jun 10, 2024Jun 10, 2024
    • A conda-smithy repository for qupath.
      Shell
      BSD 3-Clause "New" or "Revised" License
      2004Updated Mar 2, 2024Mar 2, 2024
    • Img2Mol

      Public
      Jupyter Notebook
      Apache License 2.0
      4111010Updated Mar 24, 2023Mar 24, 2023
    • Python
      0610Updated Feb 16, 2023Feb 16, 2023
    • Fork of cerebras' model zoo to include Bayer-specific changes
      Python
      Apache License 2.0
      133000Updated Dec 6, 2022Dec 6, 2022
    • pege

      Public
      Protein Environment Graph Embeddings
      Python
      1700Updated Nov 29, 2022Nov 29, 2022
    • It does.
      0000Updated Nov 8, 2022Nov 8, 2022
    • Grakn + Pytorch Geometric
      Python
      0000Updated Nov 8, 2022Nov 8, 2022
    • Python
      0000Updated Nov 8, 2022Nov 8, 2022
    • openfold

      Public
      Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
      Python
      Apache License 2.0
      549300Updated Nov 4, 2022Nov 4, 2022
    • Jupyter Notebook
      MIT License
      0930Updated Nov 3, 2022Nov 3, 2022
    • HistoQC

      Public
      HistoQC is an open-source quality control tool for digital pathology slides
      Python
      BSD 3-Clause Clear License
      105000Updated Jul 20, 2022Jul 20, 2022
    • prettymol

      Public
      Charming molecules
      Python
      Other
      0020Updated Mar 22, 2022Mar 22, 2022
    • Tensorflow-keras implementation for Contrastive Reconstruction (ConRec) : a self-supervised learning algorithm that obtains image representations by jointly optimizing a contrastive and a self-reconstruction loss.
      Python
      GNU General Public License v3.0
      31310Updated Feb 22, 2022Feb 22, 2022
    • mtpcm

      Public
      Multi-task Proteochemometric Modelling
      Python
      Apache License 2.0
      0000Updated Feb 14, 2022Feb 14, 2022
    • Adding H-donor-acceptor bonds to GNNs
      Jupyter Notebook
      MIT License
      1300Updated Jan 27, 2022Jan 27, 2022
    • Biomedical Data-to-Text Generation via Fine-Tuning Transformers
      Python
      Apache License 2.0
      32900Updated Dec 20, 2021Dec 20, 2021
    • TypeDB Loader -Data Migration Tool for TypeDB
      Java
      Apache License 2.0
      17000Updated Nov 22, 2021Nov 22, 2021
    • MoleculeNet Benchmarks in Pytorch Lightning with Torch Geometirc
      Jupyter Notebook
      MIT License
      1501Updated Oct 28, 2021Oct 28, 2021
    • Boosting GNN performance with lightweight QM features
      Python
      MIT License
      0200Updated Oct 28, 2021Oct 28, 2021
    • Python
      0100Updated Oct 5, 2021Oct 5, 2021
    • pKAI

      Public
      pKAI: a fast and interpretable deep learning approach to accurate electrostatics-driven pKa prediction
      Python
      MIT License
      82900Updated Sep 16, 2021Sep 16, 2021
    • phc-gnn

      Public
      Implementation of the Paper: "Parameterized Hypercomplex Graph Neural Networks for Graph Classification" by Tuan Le, Marco Bertolini, Frank Noé and Djork-Arné Clevert
      Python
      GNU General Public License v3.0
      63110Updated Sep 3, 2021Sep 3, 2021
    • Conda recipes for the bioconda channel.
      Shell
      3.3k000Updated Jul 20, 2021Jul 20, 2021
    • Codebase for Evaluating Attribution for Graph Neural Networks.
      Jupyter Notebook
      Apache License 2.0
      16800Updated May 31, 2021May 31, 2021
    • Python
      Other
      1300Updated Apr 23, 2021Apr 23, 2021
    • beehive

      Public
      Side project for helping beekeepers. Segment and classify honeycomb pictures to find out how many larvae, eggs, nectar, etc are in the brood.
      Python
      1100Updated Apr 9, 2021Apr 9, 2021
    • Example project showing how to use GraMi
      Java
      0310Updated Feb 19, 2021Feb 19, 2021