Repositories list

• awk_course

  Public
  Teaching material for the UPPMAX Awk course

  courseawkuppmax+ 1uppsala

  Shell

  •

  GNU General Public License v3.0

  •1•0•1•0•Updated Feb 1, 2025Feb 1, 2025

• UPPMAX-documentation

  Public
  Python

  •

  Other

  •1•5•25•0•Updated Jan 31, 2025Jan 31, 2025

• Basic_Singularity_Apptainer

  Public
  Online material for the NAISS "Basic Singularity/Apptainer workshop"

  Shell

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• programming_formalisms

  Public
  Repository for the Programming Formalisms course

  swedenprogrammingcourse+ 6englishuppmaxformalismnbisprogramming-formalismsformalisms

  Shell

  •

  GNU General Public License v3.0

  •9•0•46•0•Updated Jan 31, 2025Jan 31, 2025

• uppmax_intro_python

  Public
  pythoncoursebeginner+ 4lessonsintroductionintrouppmax

  Shell

  •0•0•6•0•Updated Jan 31, 2025Jan 31, 2025

• uppmax_intro_day_1

  Public
  Day 1 of the UPPMAX intro course

  hpcclusterintroduction+ 5introuppmaxcomputer-clusteruppsala-universityuppsala

  Shell

  •

  GNU General Public License v3.0

  •0•0•6•0•Updated Jan 31, 2025Jan 31, 2025

• ticket_306807

  Public
  Ticket 306807

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• R-matlab-julia-HPC

  Public
  Shell

  •2•9•10•0•Updated Jan 29, 2025Jan 29, 2025

• naiss_file_transfer_course

  Public
  NAISS file transfer course

  dataswedentransfer+ 9hpcrsyncsftpscpdata-transferfile-transferfilezilla+ 2

  Shell

  •

  GNU General Public License v3.0

  •0•0•3•0•Updated Jan 28, 2025Jan 28, 2025

• Whisper-sens

  Public
  A Whisper gui for sensitive data

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• to-awk-or-not

  Public
  This repositiory serves as an auxiliary material to an awk course/seminar page.

  Python

  •

  GNU General Public License v3.0

  •7•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• bianca_workshops

  Public
  Shell

  •4•1•2•0•Updated Jan 27, 2025Jan 27, 2025

• naiss_intermediate_bash_linux

  Public
  NAISS course about advanced Linux

  GNU General Public License v3.0

  •0•0•1•0•Updated Jan 27, 2025Jan 27, 2025

• R-python-julia-matlab-HPC

  Public
  Shell

  •0•0•2•0•Updated Jan 26, 2025Jan 26, 2025

• naiss_course_template

  Public
  A NAISS course template

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 26, 2025Jan 26, 2025

• HPC-python

  Public
  https://uppmax.github.io/HPC-python

  Jupyter Notebook

  •2•6•3•0•Updated Jan 24, 2025Jan 24, 2025

• ticket_304069

  Public
  RT ticket 304069

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• uppmax_board_presentation_20241203

  Public
  Presentation to the UPPMAX board on 2024-12-03

  CSS

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• programming_formalisms_intro

  Public
  Programming formalisms intro

  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• uppmax4DL

  Public
  UPPMAX for Deep Learning course material

  HTML

  •0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

• install-methods

  Public
  Install methods for UPPMAX modules plus some helper scripts

  HTML

  •3•8•1•1•Updated Sep 26, 2024Sep 26, 2024

• ticket_299338

  Public
  Notes for RT ticket 299338

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• ticket_297538

  Public
  Notes for ticket 297538

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• ticket_295686

  Public
  0•0•1•0•Updated Sep 11, 2024Sep 11, 2024

• DNABERT_2

  Public
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  Shell

  •

  Apache License 2.0

  •73•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• ticket_298623

  Public
  Notes for ticket 298623

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• ticket_297240

  Public
  Ticket 297240

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• ticket_296259

  Public
  Ticket 296259

  samrust-langbam+ 5uppmaxbiancasam-formatbam-formatvartrix

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

• ticket_296149

  Public
  Ticket 296149

  sshrsyncuppmax+ 3rackhamdarsyncdardel

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

• ticket_295455

  Public
  Ticket 295455

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024