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    31 repositories

    • streamlit-template

      Public
      Python
      •22•11•20•11•Updated Mar 8, 2025Mar 8, 2025

    • OpenMS

      Public
      The codebase of the OpenMS project
      windowsmacoslinuxc-plus-plusalgorithmsmetabolomicshacktoberfest3-clause-bsdproteomicsmass-spectrometry
      C++
      •
      Other
      •332•492•618•49•Updated Mar 8, 2025Mar 8, 2025

    • pyopenms_viz

      Public
      Streamlining Mass Spectrometry Data Visualization with Pandas
      visualizationpandasmass-spectrometry
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •8•12•7•4•Updated Mar 7, 2025Mar 7, 2025

    • streamlit-deployment

      Public
      Streamlit deployment with Docker
      8•1•0•4•Updated Mar 7, 2025Mar 7, 2025

    • THIRDPARTY

      Public
      External binary dependencies (e.g. search engine binaries) packaged in installers
      13•2•1•3•Updated Mar 6, 2025Mar 6, 2025

    • OpenMS-docs

      Public
      OpenMS Documentation.
      hacktoberfest
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •25•2•55•6•Updated Mar 6, 2025Mar 6, 2025

    • pyopenms-docs

      Public
      pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
      openmsms-datahacktoberfesthacktoberfest2022python
      Python
      •
      Other
      •59•46•46•4•Updated Mar 5, 2025Mar 5, 2025

    • .github

      Public
      OpenMS organization public GitHub profile repository
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Mar 4, 2025Mar 4, 2025

    • OpenMS-website

      Public
      Hugo sources for the OpenMS website
      HTML
      •
      Other
      •17•0•11•4•Updated Feb 28, 2025Feb 28, 2025

    • contrib

      Public
      Automated CMake build scripts for the OpenMS contrib libraries
      CMake
      •
      Other
      •21•0•7•1•Updated Feb 19, 2025Feb 19, 2025

    • OpenMS-Tutorials

      Public
      Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)
      hacktoberfest
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •19•13•38•0•Updated Jan 31, 2025Jan 31, 2025

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.4k•0•0•0•Updated Jan 18, 2025Jan 18, 2025

    • de.openms.knime

      Public
      Nodes etc. related to OpenMS
      Java
      •8•2•12•1•Updated Jan 17, 2025Jan 17, 2025

    • images

      Public
      Additional files (logos, splash screen, icons)
      1•0•2•1•Updated Jan 10, 2025Jan 10, 2025

    • PTMScanner

      Public
      SagePTMScanner OpenMS WebApp
      Python
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • dockerfiles

      Public
      This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.
      Dockerfile
      •8•2•3•0•Updated Nov 9, 2024Nov 9, 2024

    • autowrap

      Public
      Generates Python Extension modules from Cythons PXD files
      C++
      •
      Other
      •22•76•41•7•Updated Nov 7, 2024Nov 7, 2024

    • openms.github.io

      Public
      Code for our new webpage
      HTML
      •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

    • usage_plots

      Public
      Scripts for generating plots about the usage of OpenMS
      Python
      •4•2•0•0•Updated Jul 5, 2024Jul 5, 2024

    • contrib-sources

      Public
      Holds the packaged sources of chosen and tested versions of most of our needed contrib libraries.
      0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • NSIS

      Public
      A ready-to-use NSIS with 8k strings support and ModernUI
      0•2•0•0•Updated Nov 9, 2023Nov 9, 2023

    • build-scripts

      Public
      Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.
      CMake
      •3•2•2•0•Updated Aug 15, 2023Aug 15, 2023

    • scientific-python-hugo-theme

      Public
      Hugo theme based on the design for numpy.org
      HTML
      •
      Other
      •26•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • cling-notebooks

      Public archive
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•1•Updated Feb 25, 2023Feb 25, 2023

    • OpenMS-1

      Public archive
      The codebase of the OpenMS project
      C++
      •
      Other
      •332•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • PDCommunityNodes

      Public
      Community nodes for Thermo Proteome Discoverer
      C#
      •3•2•5•0•Updated Nov 29, 2022Nov 29, 2022

    • workflows

      Public archive
      KNIME workflows for use with OpenMS.
      4•2•0•0•Updated May 20, 2022May 20, 2022

    • updateHMDB

      Public
      Script to update OpenMS' internal HMDB database
      Python
      •0•0•0•0•Updated Nov 2, 2021Nov 2, 2021

    • MassBankUpdate

      Public
      Python
      •4•3•1•0•Updated Nov 29, 2018Nov 29, 2018

    • windows-installer

      Public archive
      Former Windows Installer of OpenMS based on NSIS
      NSIS
      •7•1•5•0•Updated Jun 26, 2017Jun 26, 2017