Repositories list

• PCOR_bookdown_tools

  Public
  TeX

  •3•4•1•0•Updated Feb 25, 2025Feb 25, 2025

• pcor_gen3_artifacts

  Public
  Gen3 artifacts (data model, gitops, etc) for PCOR

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•6•0•Updated Feb 25, 2025Feb 25, 2025

• beethoven

  Public
  BEETHOVEN is: Building an Extensible, rEproducible, Test-driven, Harmonized, Open-source, Versioned, ENsemble model for air quality

  R

  •

  Other

  •1•5•18•1•Updated Feb 25, 2025Feb 25, 2025

• PCOR_bookdown_staging

  Public
  TeX

  •1•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• ICE_IVIVEpipeline

  Public
  The workflow allows the flexibility to select from three different rat and human PK models

  HTML

  •5•6•0•0•Updated Feb 25, 2025Feb 25, 2025

• amadeus

  Public
  R

  •

  Other

  •2•8•14•0•Updated Feb 25, 2025Feb 25, 2025

• MOUSE_TRAP

  Public
  MOUSE_TRAP

  Python

  •2•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• SmartScope

  Public
  SmartScope is a framework for systematic evaluation of cryo-EM specimens

  HTML

  •

  Other

  •9•15•21•0•Updated Feb 21, 2025Feb 21, 2025

• SET

  Public
  SET group home page for code

  HTML

  •1•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• GeoTox

  Public
  Open-source software for connecting spatiotemporal exposure to individual and population-level risk

  R

  •

  Other

  •1•5•1•0•Updated Jan 31, 2025Jan 31, 2025

• PrestoGP

  Public
  Penalized Regression on Spatiotemporal Outcomes using Gaussian Processes a.k.a. PrestoGP

  HTML

  •1•0•14•0•Updated Jan 30, 2025Jan 30, 2025

• metalnx-web

  Public
  Metalnx Web Application

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •36•1•3•0•Updated Jan 27, 2025Jan 27, 2025

• Scientific-Developers-Guide

  Public
  Guide for scientific developers to help them navigate analyzing data, creating scientific applications, and publishing.

  scientific-visualizationscientific-computingscientific-workflows+ 3nihscientific-researchscientific-software

  JavaScript

  •

  MIT License

  •1•0•0•2•Updated Jan 17, 2025Jan 17, 2025

• Perturb-STNet

  Public
  Perturb-STNet

  R

  •1•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• chemmaps-InterPred-Bodymap

  Public
  Chemmaps/Bodymap

  JavaScript

  •3•0•2•0•Updated Dec 3, 2024Dec 3, 2024

• EHLC_Data_Harmonization

  Public
  Repository for holding content from the data harmonization use case.

  Python

  •1•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• ToxicR

  Public
  C++

  •8•23•0•0•Updated Nov 14, 2024Nov 14, 2024

• DASS

  Public
  R

  •

  MIT License

  •1•1•0•0•Updated Oct 27, 2024Oct 27, 2024

• C4

  Public
  CSS

  •1•0•0•0•Updated Oct 20, 2024Oct 20, 2024

• chords_chorus

  Public
  1•0•0•0•Updated Oct 20, 2024Oct 20, 2024

• BS-BMD

  Public
  Bayesian Set Benchmark Dose - manuscript code repo

  R

  •1•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• GIBOOST

  Public
  R

  •1•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• QSAR-ready

  Public
  Standardization workflow for QSAR-ready chemical structures pre-treatment. See "release" tab for the latest version and sample files!

  Shell

  •

  MIT License

  •8•4•0•0•Updated Oct 2, 2024Oct 2, 2024

• OPERA

  Public
  Free and open-source application (command line and GUI) providing QSAR models predictions as well as applicability domain and accuracy assessment for physicochemical properties, environmental fate and toxicological endpoints. ==================>Download the latest compiled version from the "releases" tab and run the executable installer.

  MATLAB

  •

  MIT License

  •42•74•0•0•Updated Oct 1, 2024Oct 1, 2024

• SmartScope-docs

  Public
  Documentation repository for SmartScope

  Jupyter Notebook

  •1•1•0•0•Updated Sep 20, 2024Sep 20, 2024

• brassens

  Public
  Bias-corrected Recordings from Air temperature Sensors to Support EnviroNmental Sciences

  R

  •

  MIT License

  •2•0•9•1•Updated Sep 19, 2024Sep 19, 2024

• targets_PrestoGP

  Public
  HTML

  •1•0•4•0•Updated Sep 10, 2024Sep 10, 2024

• gen3-frontend-framework

  Public
  A Frontend Framework for Gen3 data portals

  TypeScript

  •

  Apache License 2.0

  •6•0•0•2•Updated Aug 29, 2024Aug 29, 2024

• ehlc-curation

  Public
  A prototype for curating EHLC datasets using Nanobot

  Dockerfile

  •2•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• Cryomate

  Public
  C#

  •1•0•0•0•Updated Aug 16, 2024Aug 16, 2024