Repositories list

• IDC-WebApp

  Public
  Web Application front end for IDC (CORE REPO)

  core-repo

  JavaScript

  •

  Apache License 2.0

  •9•6•124•0•Updated Feb 26, 2025Feb 26, 2025

• dicom-microscopy-viewer

  Public
  Web-based DICOM slide microscopy viewer library

  javascriptnpmdicom+ 4openlayersdicomwebdicom-jsonidc-viewers

  JavaScript

  •

  MIT License

  •38•105•9•4•Updated Feb 26, 2025Feb 26, 2025

• slim

  Public
  Interoperable web-based DICOM slide microscopy viewer and annotation tool

  reactoidcdicomweb+ 2digital-pathologyidc-viewers

  TypeScript

  •

  Apache License 2.0

  •39•129•68•8•Updated Feb 26, 2025Feb 26, 2025

• highdicom

  Public
  High-level DICOM abstractions for the Python programming language

  numpydicompython3+ 2pydicomtypehints

  Python

  •

  MIT License

  •39•191•25•5•Updated Feb 26, 2025Feb 26, 2025

• idc-slim

  Public
  Interoperable slide microscopy viewer for thin clients (CORE REPO)

  core-repoidc-viewers

  TypeScript

  •

  Apache License 2.0

  •0•0•2•0•Updated Feb 25, 2025Feb 25, 2025

• s5cmd-python-distributions

  Public
  This project provides the infrastructure to build s5cmd Python wheels.

  Python

  •

  MIT License

  •0•4•0•0•Updated Feb 25, 2025Feb 25, 2025

• libdicom

  Public
  C library for reading DICOM files

  cdicommedical-imaging

  C

  •

  MIT License

  •8•17•2•1•Updated Feb 25, 2025Feb 25, 2025

• IDC-Docs

  Public
  Source for IDC documentation

  BSD 3-Clause "New" or "Revised" License

  •2•5•7•1•Updated Feb 24, 2025Feb 24, 2025

• CloudSegmentator

  Public
  Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud

  Jupyter Notebook

  •

  Apache License 2.0

  •3•4•4•0•Updated Feb 23, 2025Feb 23, 2025

• idc-index

  Public
  Python package to simplify access to the data available from NCI Imaging Data Commons

  Python

  •

  MIT License

  •6•12•21•0•Updated Feb 22, 2025Feb 22, 2025

• idc-index-data

  Public
  Python package providing the index to query and download data hosted by the NCI Imaging Data Commons

  Python

  •

  MIT License

  •4•1•2•0•Updated Feb 21, 2025Feb 21, 2025

• idc-wsi-conversion

  Public
  (CORE REPO)

  core-repo

  Shell

  •

  Other

  •0•12•1•0•Updated Feb 21, 2025Feb 21, 2025

• idc-sm-annotations-conversion

  Public
  conversiondicompathomics

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• IDC-Common

  Public
  Shared code between repositories (CORE REPO)

  core-repo

  Python

  •

  Apache License 2.0

  •4•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• IDC-Tutorials

  Public
  Self-guided notebook tutorials to help get started with IDC

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •17•30•16•7•Updated Feb 19, 2025Feb 19, 2025

• etl_flow

  Public
  (CORE REPO)

  core-repo

  Python

  •

  Apache License 2.0

  •3•4•4•0•Updated Feb 14, 2025Feb 14, 2025

• github_analytics

  Public
  Scripts for monitoring and archival of GitHub insights for IDC-related repositories

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• ThrottleProxy

  Public
  (CORE REPO)

  core-repo

  Python

  •

  Apache License 2.0

  •0•2•4•0•Updated Feb 8, 2025Feb 8, 2025

• ohif-gcp-mode

  Public
  OHIF GCP Mode

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• ViewersV3

  Public
  OHIF zero-footprint DICOM viewer tracking V3 (CORE REPO)

  core-repoidc-viewers

  TypeScript

  •

  MIT License

  •3.6k•0•1•0•Updated Feb 4, 2025Feb 4, 2025

• IDC-Cron

  Public
  Cron jobs run for IDC monitoring (CORE REPO)

  core-repo

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• idc-viewers-sandbox-gha-testing

  Public
  MIT License

  •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• .github

  Public
  MIT License

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• IDC-API

  Public
  Google Endpoints API providing programmatic access (CORE REPO)

  core-repo

  Python

  •

  Apache License 2.0

  •3•0•3•0•Updated Jan 7, 2025Jan 7, 2025

• idc-comppath-reproducibility

  Public
  Classification of lung tumor slide images with the NCI Imaging Data Commons

  machine-learningartificial-intelligencecloud-computing+ 3reproducibilityfair-datacomputational-pathology

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Dec 20, 2024Dec 20, 2024

• Viewers

  Public
  OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)

  core-repoidc-viewers

  JavaScript

  •

  MIT License

  •3.6k•2•4•1•Updated Dec 19, 2024Dec 19, 2024

• aws_etl

  Public
  Code to transfer IDC image files from Google Cloud Storage to AWS S3 (CORE REPO)

  core-repo

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Nov 23, 2024Nov 23, 2024

• SlicerIDCBrowser

  Public
  A 3D Slicer extension to support access to the content of NCI Imaging Data Commons

  3d-slicer-extension

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•5•13•1•Updated Nov 18, 2024Nov 18, 2024

• idc-prostate-mri-analysis

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •2•4•0•0•Updated Nov 8, 2024Nov 8, 2024

• ohif-gcp-extension

  Public
  TypeScript

  •

  MIT License

  •0•0•1•0•Updated Nov 4, 2024Nov 4, 2024