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Issues list

Have web client output pdbfixer script to reproduce what was done enhancement
#87 opened Mar 10, 2015 by jchodera
1
Test pdbfixer on entire PDB
#27 opened Mar 31, 2014 by jchodera
12
Multi-tenant PDBFixer on a public server enhancement long-shot
#29 opened Mar 31, 2014 by rmcgibbo
8
What to do about residues without computer-readable molecular definitions? enhancement
#31 opened Apr 13, 2014 by jchodera
6
addMissingHydrogens gives an unhelpful exception if there are no hydrogens to be added bug
#33 opened Apr 13, 2014 by jchodera
4
Proposals for handling residue replacement enhancement
#44 opened Jun 20, 2014 by jchodera
17
Implement wrapper for propka enhancement
#47 opened Jun 24, 2014 by kyleabeauchamp
8
This PDB is not properly neutralized bug
#49 opened Jul 16, 2014 by leeping
2
Add support for more standard mutation specification terminology enhancement
#50 opened Aug 9, 2014 by jchodera
3
Add support for more sophisticated selection scheme (similar to pymol?) for manipulating chains and residues enhancement
#53 opened Aug 10, 2014 by jchodera
Adding hydrogen to lipids
#56 opened Sep 24, 2014 by ChayaSt
1
Test suite for optimizing PDBFixer
#59 opened Oct 24, 2014 by peastman
4
Add option for extracting only specific residues from specified chains enhancement
#11 opened Mar 19, 2014 by jchodera
2
Modeling pipeline
#68 opened Nov 16, 2014 by jchodera
4
Add option to only model internal loops enhancement
#90 opened Apr 30, 2015 by jchodera
[FR] Support for modeling non-standard residues enhancement
#91 opened May 1, 2015 by cxhernandez
9
Deformed PDB files produced with PDBFixer bug
#92 opened Jun 19, 2015 by jchodera
32
PDBFixer does not preserve the CONECT records in output files
#111 opened Oct 7, 2015 by rafwiewiora
2
Add option to remove crystallographic waters but keep heterogens
#126 opened Mar 26, 2016 by jchodera
Enable nightly builds
#129 opened Apr 10, 2016 by jchodera
2
Citing pdbfixer
#137 opened Jul 20, 2016 by jchodera
2
findMissingResidues() does not work on files that have been through pdbfixer already
#138 opened Jul 20, 2016 by rafwiewiora
2
addMissingHydrogens() fails under Windows
#142 opened Nov 1, 2016 by jepdavidson
3
N-terminal residue added with wrong chirality and/or a cis-peptide bond
#145 opened Jan 10, 2017 by rafwiewiora
29
Non-unified processing of cysteine residues
#326 opened Mar 7, 2025 by beautifulpie
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