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[PRE REVIEW]: taurex-emcee: automated, parallelized atmospheric retrievals with TauREx 3.1 and the emcee sampler #6280

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editorialbot opened this issue Jan 25, 2024 · 15 comments
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pre-review Python query-scope Submissions of uncertain scope for JOSS rejected TeX Track: 1 (AASS) Astronomy, Astrophysics, and Space Sciences

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Submitting author: @abocchieri (Andrea Bocchieri)
Repository: https://github.com/ExObsSim/taurex-emcee
Branch with paper.md (empty if default branch): joss
Version: v0.4.0-beta
Editor: Pending
Reviewers: Pending
Managing EiC: Dan Foreman-Mackey

Status

status

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HTML: <a href="https://joss.theoj.org/papers/54464cd302ddd06fc2305634889f1a14"><img src="https://joss.theoj.org/papers/54464cd302ddd06fc2305634889f1a14/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/54464cd302ddd06fc2305634889f1a14/status.svg)](https://joss.theoj.org/papers/54464cd302ddd06fc2305634889f1a14)

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Thanks for submitting your paper to JOSS @abocchieri. Currently, there isn't a JOSS editor assigned to your paper.

@abocchieri if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

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@editorialbot editorialbot added pre-review Track: 1 (AASS) Astronomy, Astrophysics, and Space Sciences labels Jan 25, 2024
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

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Checking the BibTeX entries failed with the following error:

Failed to parse BibTeX on value "," (COMMA) [#<BibTeX::Bibliography data=[23]>, "@", #<BibTeX::Entry >, {:author=>["John Geweke"], :title=>["{Evaluating the accuracy of sampling-based approaches to the calculation of posterior moments}"], :year=>"1991"}, ",", "month", "="]

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Software report:

github.com/AlDanial/cloc v 1.88  T=0.03 s (297.3 files/s, 72570.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                           4            143            191            581
TeX                              1             31              0            474
Jupyter Notebook                 1              0            645            181
Markdown                         2             43              0            125
YAML                             1              1              4             18
Bourne Shell                     1              0              1              3
-------------------------------------------------------------------------------
SUM:                            10            218            841           1382
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

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Wordcount for paper.md is 2242

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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dfm commented Jan 25, 2024

@editorialbot query scope

@abocchieri — Thanks for your submission! Given the small size of this code base, I have submitted this pre-review for editorial review. This usually takes a week or two and I'll report back here as soon as I hear back from the rest of the editorial board. Thanks for your patience!

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Submission flagged for editorial review.

@editorialbot editorialbot added the query-scope Submissions of uncertain scope for JOSS label Jan 25, 2024
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Five most similar historical JOSS papers:

ExoTETHyS: Tools for Exoplanetary Transits around host stars
Submitting author: @gmorello
Handling editor: @arfon (Active)
Reviewers: @steven-murray, @williamjameshandley
Similarity score: 0.8106

Astronomical échelle spectroscopy data analysis with muler
Submitting author: @gully
Handling editor: @xuanxu (Active)
Reviewers: @bmorris3, @wtgee
Similarity score: 0.8085

Bayesian X-ray Analysis (BXA) v4.0
Submitting author: @JohannesBuchner
Handling editor: @jgostick (Active)
Reviewers: @cescalara, @cescalara, @grburgess
Similarity score: 0.8066

CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code
Submitting author: @zingale
Handling editor: @eloisabentivegna (Active)
Reviewers: @kegiljarhus, @bonh, @joshia5
Similarity score: 0.8049

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series
Submitting author: @dfm
Handling editor: @arfon (Active)
Reviewers: @grburgess, @benjaminpope
Similarity score: 0.8043

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@abocchieri
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@dfm Thank you for this opportunity. I am looking forward to the review.

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abocchieri commented Jan 27, 2024

Meanwhile, I have filled previously placeholder links to PyPi and readthedocs.

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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

ExoTETHyS: Tools for Exoplanetary Transits around host stars
Submitting author: @gmorello
Handling editor: @arfon (Active)
Reviewers: @steven-murray, @williamjameshandley
Similarity score: 0.8106

Astronomical échelle spectroscopy data analysis with muler
Submitting author: @gully
Handling editor: @xuanxu (Active)
Reviewers: @bmorris3, @wtgee
Similarity score: 0.8085

Bayesian X-ray Analysis (BXA) v4.0
Submitting author: @JohannesBuchner
Handling editor: @jgostick (Active)
Reviewers: @cescalara, @cescalara, @grburgess
Similarity score: 0.8066

CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code
Submitting author: @zingale
Handling editor: @eloisabentivegna (Active)
Reviewers: @kegiljarhus, @bonh, @joshia5
Similarity score: 0.8049

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series
Submitting author: @dfm
Handling editor: @arfon (Active)
Reviewers: @grburgess, @benjaminpope
Similarity score: 0.8043

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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dfm commented Feb 4, 2024

@editorialbot reject

@abocchieri — Thanks for your patience. The JOSS editorial board has decided that, given the small size and scope, this submission does not reach the bar for "substantial scholarly effort" as defined by the journal. This is not a judgement of the scientific merit of the software, just an application of JOSS's policy.

One possible alternative to JOSS is to follow GitHub's guide on how to create a permanent archive and DOI for your software. This DOI can then be used by others to cite your work.

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Paper rejected.

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