From ec951f94445b7c4d9f5fa355838dd22170e07503 Mon Sep 17 00:00:00 2001 From: Qiusheng Wu Date: Sun, 22 Sep 2024 17:56:07 -0400 Subject: [PATCH] Add uv to GitHub Actions (#899) * Add uv to GitHub Actions * remove frozen * Remove python 3.13 * Fix uv run * Add uv run * Add uv run * Add env variables * Update installation test * Update macos uv * Update docs build * Update windows test * Update docs yml * Update ubuntu * Update names * Add GDAL * Add pyproj * Remove python 3.13 * Add gdal * Fix gdal error * Add uv.lock --- .github/workflows/docs-build.yml | 61 +- .github/workflows/docs.yml | 64 +- .github/workflows/installation.yml | 19 +- .github/workflows/macos.yml | 23 +- .github/workflows/py313.yml | 46 + .github/workflows/ubuntu.yml | 58 + .github/workflows/ubuntu_test.yml | 83 - .github/workflows/windows.yml | 50 +- .mergify.yml | 10 +- pyproject.toml | 8 +- requirements.txt | 2 +- requirements_dev.txt | 4 +- uv.lock | 6796 ++++++++++++++++++++++++++++ 13 files changed, 6996 insertions(+), 228 deletions(-) create mode 100644 .github/workflows/py313.yml create mode 100644 .github/workflows/ubuntu.yml delete mode 100644 .github/workflows/ubuntu_test.yml create mode 100644 uv.lock diff --git a/.github/workflows/docs-build.yml b/.github/workflows/docs-build.yml index c395537029..3f9d75bc59 100644 --- a/.github/workflows/docs-build.yml +++ b/.github/workflows/docs-build.yml @@ -12,10 +12,6 @@ jobs: matrix: python-version: ["3.12"] - defaults: - run: - shell: bash -el {0} - env: PLANET_API_KEY: ${{ secrets.PLANET_API_KEY }} USE_FOLIUM: ${{ secrets.USE_FOLIUM }} @@ -30,54 +26,39 @@ jobs: - uses: actions/checkout@v4 with: fetch-depth: 0 - - name: Setup Python - uses: conda-incubator/setup-miniconda@v3 - with: - auto-activate-base: true - python-version: ${{ matrix.python-version }} - channels: conda-forge,defaults - channel-priority: true - miniconda-version: latest - - name: Cache dependencies - uses: actions/cache@v4 + - name: Install uv + uses: astral-sh/setup-uv@v2 with: - path: ~/.cache/pip - key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} - restore-keys: | - ${{ runner.os }}-pip- + version: "0.4.12" + enable-cache: true - - name: Testing conda - run: | - conda info - conda list + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} - - name: Install GDAL - run: | - # conda install -c conda-forge mamba --yes - # mamba install -c conda-forge gdal pyproj --yes - pip install --no-cache-dir Cython - pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL + - name: Install dependencies + run: uv sync --python ${{ matrix.python-version }} - - name: Test GDAL installation + - name: Install optional dependencies run: | - python -c "from osgeo import gdal" - gdalinfo --version + uv pip install --find-links https://girder.github.io/large_image_wheels GDAL pyproj + uv pip install pytest + uv pip install -r requirements_dev.txt - - name: Install dependencies + - name: Test import run: | - pip install -U pip - pip install --no-cache-dir Cython PyYAML==6.0.1 boto3 - pip install -r requirements.txt -r requirements_dev.txt - pip install . + uv run python -c "import leafmap; print('leafmap import successful')" + uv run python -c "from osgeo import gdal; print('gdal import successful')" + uv run gdalinfo --version - - name: PKG-TEST - run: python -m unittest discover tests/ + - name: Running pytest + run: | + uv run pytest . --verbose - name: Install mkdocs run: | - pip install -r requirements_docs.txt - mkdocs build + uv pip install -r requirements_docs.txt + uv run mkdocs build - name: Deploy to Netlify uses: nwtgck/actions-netlify@v3.0 diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index ca5254261c..6a35cc0809 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -1,8 +1,10 @@ name: docs + on: push: branches: - master + jobs: deploy: runs-on: ubuntu-latest @@ -10,10 +12,6 @@ jobs: matrix: python-version: ["3.12"] - defaults: - run: - shell: bash -el {0} - env: PLANET_API_KEY: ${{ secrets.PLANET_API_KEY }} USE_FOLIUM: ${{ secrets.USE_FOLIUM }} @@ -24,54 +22,40 @@ jobs: GOOGLE_MAPS_API_KEY: ${{ secrets.GOOGLE_MAPS_API_KEY }} EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }} EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD }} - steps: - uses: actions/checkout@v4 with: fetch-depth: 0 - - name: Setup Python - uses: conda-incubator/setup-miniconda@v3 - with: - auto-activate-base: true - python-version: ${{ matrix.python-version }} - channels: conda-forge,defaults - channel-priority: true - miniconda-version: latest - - name: Cache dependencies - uses: actions/cache@v4 + - name: Install uv + uses: astral-sh/setup-uv@v2 with: - path: ~/.cache/pip - key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} - restore-keys: | - ${{ runner.os }}-pip- + version: "0.4.12" + enable-cache: true - - name: Testing conda - run: | - conda info - conda list + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} - - name: Install GDAL - run: | - # conda install -c conda-forge mamba --yes - # mamba install -c conda-forge gdal pyproj --yes - pip install --no-cache-dir Cython - pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL + - name: Install dependencies + run: uv sync --python ${{ matrix.python-version }} - - name: Test GDAL installation + - name: Install optional dependencies run: | - python -c "from osgeo import gdal" - gdalinfo --version + uv pip install --find-links https://girder.github.io/large_image_wheels GDAL pyproj + uv pip install pytest + uv pip install -r requirements_dev.txt - - name: Install dependencies + - name: Test import run: | - pip install --no-cache-dir Cython PyYAML==6.0.1 - pip install -r requirements.txt -r requirements_dev.txt - pip install . + uv run python -c "import leafmap; print('leafmap import successful')" + uv run python -c "from osgeo import gdal; print('gdal import successful')" + uv run gdalinfo --version - - name: PKG-TEST - run: python -m unittest discover tests/ + - name: Running pytest + run: | + uv run pytest . --verbose - name: Install mkdocs - run: pip install -r requirements_docs.txt - - run: mkdocs gh-deploy --force + run: | + uv pip install -r requirements_docs.txt + uv run mkdocs gh-deploy --force diff --git a/.github/workflows/installation.yml b/.github/workflows/installation.yml index 487a553d89..6377ab6576 100644 --- a/.github/workflows/installation.yml +++ b/.github/workflows/installation.yml @@ -16,11 +16,18 @@ jobs: python-version: ["3.12"] steps: - uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v5 + + - name: Install uv + uses: astral-sh/setup-uv@v2 with: - python-version: ${{ matrix.python-version }} - - name: Install package - run: pip install setuptools . + version: "0.4.12" + enable-cache: true + + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} + + - name: Install dependencies + run: uv sync --python ${{ matrix.python-version }} + - name: Test import - run: python -c "import leafmap; print('leafmap import successful')" + run: uv run python -c "import leafmap; print('leafmap import successful')" diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml index 8bac1fd80e..4973a833b5 100644 --- a/.github/workflows/macos.yml +++ b/.github/workflows/macos.yml @@ -19,13 +19,20 @@ jobs: env: SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk steps: - - name: CHECKOUT CODE - uses: actions/checkout@v4 - - name: SETUP PYTHON - uses: actions/setup-python@v5 + - uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v2 with: - python-version: ${{ matrix.config.py }} - - name: Install package - run: pip install . + version: "0.4.12" + enable-cache: true + + - name: Set up Python ${{ matrix.config.py }} + run: uv python install ${{ matrix.config.py }} + + - name: Install dependencies + run: uv sync --python ${{ matrix.config.py }} + - name: Test import - run: python -c "import leafmap; print('leafmap import successful')" + run: | + uv run python -c "import leafmap; print('leafmap import successful')" diff --git a/.github/workflows/py313.yml b/.github/workflows/py313.yml new file mode 100644 index 0000000000..7c1c45ccb1 --- /dev/null +++ b/.github/workflows/py313.yml @@ -0,0 +1,46 @@ +name: TestingLeafmapUbuntu + +on: + push: + branches: ["master"] + pull_request: + branches: ["master"] + +jobs: + test-ubuntu: + runs-on: ubuntu-latest + + strategy: + fail-fast: false + matrix: + python-version: ["3.13"] + + env: + PLANET_API_KEY: ${{ secrets.PLANET_API_KEY }} + USE_FOLIUM: ${{ secrets.USE_FOLIUM }} + USE_MKDOCS: ${{ secrets.USE_MKDOCS }} + HEREMAPS_API_KEY: ${{ secrets.HEREMAPS_API_KEY }} + DP_TOKEN: ${{ secrets.DP_TOKEN }} + MAPBOX_TOKEN: ${{ secrets.MAPBOX_TOKEN }} + AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} + AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} + GOOGLE_MAPS_API_KEY: ${{ secrets.GOOGLE_MAPS_API_KEY }} + + steps: + - uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v2 + with: + version: "0.4.12" + enable-cache: true + + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} + + - name: Install dependencies + run: uv sync --python ${{ matrix.python-version }} + + - name: Test import + run: | + uv run python -c "import leafmap; print('leafmap import successful')" diff --git a/.github/workflows/ubuntu.yml b/.github/workflows/ubuntu.yml new file mode 100644 index 0000000000..4c400438fd --- /dev/null +++ b/.github/workflows/ubuntu.yml @@ -0,0 +1,58 @@ +name: TestingLeafmapUbuntu + +on: + push: + branches: ["master"] + pull_request: + branches: ["master"] + +jobs: + test-ubuntu: + runs-on: ubuntu-latest + + strategy: + fail-fast: false + matrix: + python-version: ["3.9", "3.10", "3.11", "3.12"] + + env: + PLANET_API_KEY: ${{ secrets.PLANET_API_KEY }} + USE_FOLIUM: ${{ secrets.USE_FOLIUM }} + USE_MKDOCS: ${{ secrets.USE_MKDOCS }} + HEREMAPS_API_KEY: ${{ secrets.HEREMAPS_API_KEY }} + DP_TOKEN: ${{ secrets.DP_TOKEN }} + MAPBOX_TOKEN: ${{ secrets.MAPBOX_TOKEN }} + AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} + AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} + GOOGLE_MAPS_API_KEY: ${{ secrets.GOOGLE_MAPS_API_KEY }} + + steps: + - uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v2 + with: + version: "0.4.12" + enable-cache: true + + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} + + - name: Install dependencies + run: uv sync --python ${{ matrix.python-version }} + + - name: Install optional dependencies + run: | + uv pip install --find-links https://girder.github.io/large_image_wheels gdal pyproj + uv pip install pytest + uv pip install -r requirements_dev.txt + + - name: Test import + run: | + uv run python -c "import leafmap; print('leafmap import successful')" + uv run python -c "from osgeo import gdal; print('gdal import successful')" + uv run gdalinfo --version + + - name: Running pytest + run: | + uv run pytest . --verbose diff --git a/.github/workflows/ubuntu_test.yml b/.github/workflows/ubuntu_test.yml deleted file mode 100644 index c912b7f3e8..0000000000 --- a/.github/workflows/ubuntu_test.yml +++ /dev/null @@ -1,83 +0,0 @@ -name: "TestingLeafmapUbuntu" - -on: - push: - branches: - - master - pull_request: - branches: - - master - -jobs: - test-ubuntu: - runs-on: ubuntu-latest - strategy: - fail-fast: false - matrix: - python-version: ["3.9", "3.10", "3.11", "3.12"] - - defaults: - run: - shell: bash -el {0} - - env: - PLANET_API_KEY: ${{ secrets.PLANET_API_KEY }} - USE_FOLIUM: ${{ secrets.USE_FOLIUM }} - USE_MKDOCS: ${{ secrets.USE_MKDOCS }} - HEREMAPS_API_KEY: ${{ secrets.HEREMAPS_API_KEY }} - DP_TOKEN: ${{ secrets.DP_TOKEN }} - MAPBOX_TOKEN: ${{ secrets.MAPBOX_TOKEN }} - AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} - AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} - GOOGLE_MAPS_API_KEY: ${{ secrets.GOOGLE_MAPS_API_KEY }} - - steps: - - uses: actions/checkout@v4 - - - name: Setup Python - uses: conda-incubator/setup-miniconda@v3 - with: - auto-activate-base: true - python-version: ${{ matrix.python-version }} - channels: conda-forge,defaults - channel-priority: true - miniconda-version: latest - - - name: Cache dependencies - uses: actions/cache@v4 - with: - path: ~/.cache/pip - key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} - restore-keys: | - ${{ runner.os }}-pip- - - - name: Testing conda - run: | - conda info - conda list - - - name: Install GDAL - run: | - conda install -c conda-forge mamba --yes - mamba install -c conda-forge gdal pyproj pyzmq --yes - - - name: Test GDAL installation - run: | - python -c "from osgeo import gdal" - gdalinfo --version - - - name: Install dependencies - run: | - # pip install -r requirements.txt -r requirements_dev.txt - pip install . - pip install pytest - pip install geopandas - pip install pmtiles - pip install -r requirements_dev.txt - - - name: Test import - run: python -c "import leafmap; print('leafmap import successful')" - - - name: Running pytest - run: | - pytest . --verbose diff --git a/.github/workflows/windows.yml b/.github/workflows/windows.yml index 1801a746b6..2fcacfa67d 100644 --- a/.github/workflows/windows.yml +++ b/.github/workflows/windows.yml @@ -14,10 +14,6 @@ jobs: matrix: python-version: ["3.12"] - defaults: - run: - shell: bash -el {0} - env: PLANET_API_KEY: ${{ secrets.PLANET_API_KEY }} USE_FOLIUM: ${{ secrets.USE_FOLIUM }} @@ -30,48 +26,18 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Setup Python - uses: conda-incubator/setup-miniconda@v3 - with: - auto-activate-base: true - python-version: ${{ matrix.python-version }} - channels: conda-forge,defaults - channel-priority: true - miniconda-version: latest - - - name: Cache dependencies - uses: actions/cache@v4 + - name: Install uv + uses: astral-sh/setup-uv@v2 with: - path: ~/.cache/pip - key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} - restore-keys: | - ${{ runner.os }}-pip- - - - name: Testing conda - run: | - conda info - conda list + version: "0.4.12" + enable-cache: true - - name: Install GDAL - run: | - conda install -c conda-forge mamba --yes - mamba install -c conda-forge gdal pyproj --yes - - - name: Test GDAL installation - run: | - python -c "from osgeo import gdal" - gdalinfo --version + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} - name: Install dependencies - run: | - pip install -r requirements.txt - pip install . - pip install pytest - pip install -r requirements_dev.txt + run: uv sync --python ${{ matrix.python-version }} - name: Test import - run: python -c "import leafmap; print('leafmap import successful')" - - - name: Testing with pytest run: | - pytest . --verbose + uv run python -c "import leafmap; print('leafmap import successful')" diff --git a/.mergify.yml b/.mergify.yml index 1a2a410085..79f71aca43 100644 --- a/.mergify.yml +++ b/.mergify.yml @@ -9,8 +9,10 @@ pull_request_rules: - check-success=test-ubuntu (3.10) - check-success=test-ubuntu (3.11) - check-success=test-ubuntu (3.12) - - check-success=test-windows (3.11) - - check-success=macOS-latest (3.11) + - check-success=test-ubuntu (3.13) + - check-success=test-windows (3.12) + - check-success=macOS-latest (3.12) + - check-success=docs-build (3.12) # Approval by reviewer at least one maintainer # - "#approved-reviews-by>=1" - base=master @@ -25,7 +27,7 @@ pull_request_rules: merge: method: squash - - name: information about conflicts pull request + - name: Information about conflicts pull request conditions: # If the requirement are satisfied # The bot will trigger conflict process @@ -33,7 +35,7 @@ pull_request_rules: actions: comment: # Message if there's conflict on pull request - message: your pull request are conflict @{{author}}, please fix it ! + message: Your pull request are in conflict @{{author}}, please fix it! label: # adding label on pull request if get trigger add: diff --git a/pyproject.toml b/pyproject.toml index c4d28482de..6346f082ee 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,7 +10,7 @@ dynamic = [ ] description = "A Python package for geospatial analysis and interactive mapping in a Jupyter environment." readme = "README.md" -requires-python = ">=3.8" +requires-python = ">=3.9" license = {text = "MIT license"} keywords = ["leafmap"] classifiers = [ @@ -19,11 +19,11 @@ classifiers = [ "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", ] authors = [{name = "Qiusheng Wu", email = "giswqs@gmail.com"}] @@ -37,6 +37,7 @@ vector = ["geopandas", "osmnx", "pmtiles", "flask", "flask-cors", "lonboard", "m pmtiles = ["pmtiles", "flask", "flask-cors"] ai = ["geopandas", "osmnx", "localtileserver>=0.10.0", "rastervision", "pytorch-lightning"] maplibre = ["geopandas", "h3", "ipyvuetify", "localtileserver", "mapclassify", "maplibre", "pmtiles", "rioxarray", "xarray"] +gdal = ["gdal", "pyproj"] [tool] [tool.setuptools.packages.find] @@ -73,5 +74,8 @@ max-line-length = 88 [tool.setuptools_scm] +[tool.uv] +find-links = ["https://girder.github.io/large_image_wheels"] + [project.urls] Homepage = "https://github.com/opengeos/leafmap" \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index fd6bfd89f7..4b4e168e99 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ anywidget>=0.9.13 bqplot>=0.12.43 colour>=0.1.5 -duckdb>=0.10.3 +duckdb>=0.10.3; python_version < '3.13' folium>=0.14.0 gdown>=5.1.0 geojson>=3.1.0 diff --git a/requirements_dev.txt b/requirements_dev.txt index 33182b3e93..74b82badbf 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -30,7 +30,7 @@ panel plotly pmtiles pre-commit -psycopg2 +# psycopg2 pycrs pydeck pyntcloud[LAS] @@ -40,6 +40,6 @@ rasterio rasterstats rio-cogeo rioxarray -sqlalchemy +# sqlalchemy # streamlit-folium # tippecanoe diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000000..4bda5e9bce --- /dev/null +++ b/uv.lock @@ -0,0 +1,6796 @@ +version = 1 +requires-python = ">=3.9" +resolution-markers = [ + "python_full_version < '3.10' and platform_machine == 'arm64' and platform_system == 'Darwin'", + "python_full_version < '3.10' and platform_machine == 'aarch64' and platform_system == 'Linux'", + "(python_full_version < '3.10' and platform_machine != 'aarch64' and platform_machine != 'arm64' and platform_system != 'Emscripten') or (python_full_version < '3.10' and platform_machine == 'aarch64' and platform_system != 'Emscripten' and platform_system != 'Linux') or (python_full_version < '3.10' and platform_machine == 'arm64' and platform_system != 'Darwin' and platform_system != 'Emscripten')", + "python_full_version == '3.10.*' and platform_system == 'Darwin'", + "python_full_version == '3.10.*' and platform_machine == 'aarch64' and platform_system == 'Linux'", + "(python_full_version == '3.10.*' and platform_machine != 'aarch64' and platform_system != 'Darwin' and platform_system != 'Emscripten') or (python_full_version == '3.10.*' and platform_system != 'Darwin' and platform_system != 'Emscripten' and platform_system != 'Linux')", + "python_full_version < '3.10' and platform_system == 'Emscripten'", + "python_full_version == '3.10.*' and platform_system == 'Emscripten'", + "python_full_version == '3.11.*' and platform_system == 'Darwin'", + "python_full_version == '3.11.*' 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