Hardcoded Metadata Extraction Overwrites Configuration Schemes in submission_extract_metadata.rb

[muhammedBkf]

In the extract_metadata method, the code is designed to extract version information and ontology IRI from the submission file. This extraction process is overriding the configuration schemes defined in config/schemes/ontology_submission.yml, so even if we set extractedMetadata to false it gets extracted anyways.

Code in Question:

ontologies_linked_data/lib/ontologies_linked_data/services/submission_process/operations/submission_extract_metadata.rb

Lines 11 to 16 in 9605eb4

	def extract_metadata(logger, user_params, heavy_extraction: true)
	version_info = extract_version
	ontology_iri = extract_ontology_iri
	@submission.version = version_info if version_info
	@submission.uri = ontology_iri if ontology_iri
	@submission.save

Configuration Scheme:

ontologies_linked_data/config/schemes/ontology_submission.yml

Lines 37 to 61 in 838c92c

	#Version IRI
	versionIRI:
	display: "general"
	label: "Version IRI"
	helpText: "The property that identifies the version IRI of an ontology."
	example: 'https://w3id.org/myontology/3.2.0'
	description: [
	"OWL: The property that identifies the version IRI of an ontology." ]
	extractedMetadata: true
	#Version information
	version:
	display: 'general'
	label: "Version information"
	helpText: "The version information of the ontology."
	example: "v.3.2.0"
	description: [
	"OMV: The version information of the ontology.",
	"MOD: The current version of the ontology. Possibly using Semantic versioning.",
	"OWL: The annotation property that provides version information for an ontology or another OWL construct. ",
	"PAV: The version number of a resource.",
	"DOAP: A project release",
	"SCHEMA: The version of the CreativeWork embodied by a specified resource."]
	extractedMetadata: true
	metadataMappings: [ "omv:version", "mod:version", "owl:versionInfo", "pav:version", "doap:release", "schema:version", "oboInOwl:data-version", "oboInOwl:version" ]