diff --git a/Gemfile.lock b/Gemfile.lock
new file mode 100644
index 00000000..80bcbfdb
--- /dev/null
+++ b/Gemfile.lock
@@ -0,0 +1,467 @@
+GIT
+  remote: https://github.com/ncbo/ncbo_ontology_recommender.git
+  revision: 013abea4af3b10910ec661dbb358a4b6cae198a4
+  branch: master
+  specs:
+    ncbo_ontology_recommender (0.0.1)
+      goo
+      ncbo_annotator
+      ontologies_linked_data
+      redis
+
+GIT
+  remote: https://github.com/ontoportal-lirmm/goo.git
+  revision: a95245b8c964431505ca6315907440996c59a00d
+  branch: development
+  specs:
+    goo (0.0.2)
+      addressable (~> 2.8)
+      pry
+      rdf (= 3.2.11)
+      rdf-raptor
+      rdf-rdfxml
+      rdf-vocab
+      redis
+      rest-client
+      rsolr
+      sparql-client
+      uuid
+
+GIT
+  remote: https://github.com/ontoportal-lirmm/ncbo_annotator.git
+  revision: 1eb751b65d10ae23d45c74e0516c78754a8419f0
+  branch: development
+  specs:
+    ncbo_annotator (0.0.1)
+      goo
+      ontologies_linked_data
+      redis
+      ruby-xxHash
+
+GIT
+  remote: https://github.com/ontoportal-lirmm/ncbo_cron.git
+  revision: bed0ff08408ad1241db3513992ad025a253eeef0
+  branch: master
+  specs:
+    ncbo_cron (0.0.1)
+      dante
+      goo
+      google-analytics-data
+      google-apis-analytics_v3
+      mlanett-redis-lock
+      multi_json
+      ncbo_annotator
+      ontologies_linked_data
+      redis
+      rufus-scheduler (~> 2.0.24)
+
+GIT
+  remote: https://github.com/ontoportal-lirmm/ontologies_linked_data.git
+  revision: 99b934317f303f9ea839413de4ff8a5638ac074f
+  branch: feature/parse-diff-files
+  specs:
+    ontologies_linked_data (0.0.1)
+      activesupport
+      bcrypt
+      goo
+      json
+      libxml-ruby
+      multi_json
+      oj
+      omni_logger
+      pony
+      rack
+      rack-test
+      rsolr
+      rubyzip
+
+GIT
+  remote: https://github.com/ontoportal-lirmm/sparql-client.git
+  revision: 59251e59346c9a69a67c88552ba55a1244eec602
+  branch: development
+  specs:
+    sparql-client (3.2.2)
+      net-http-persistent (~> 4.0, >= 4.0.2)
+      rdf (~> 3.2, >= 3.2.11)
+
+GIT
+  remote: https://github.com/palexander/rack-post-body-to-params.git
+  revision: 0fd30e710386d0cb8a3a6833d9549d7b655d5398
+  branch: multipart_support
+  specs:
+    rack-post-body-to-params (0.1.8)
+      activesupport (>= 2.3)
+
+GIT
+  remote: https://github.com/palexander/shotgun.git
+  revision: db198224aaab2e4cb9b049adccb30e387d88bc3b
+  branch: ncbo
+  specs:
+    shotgun (0.9)
+      rack (>= 1.0)
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (3.2.22.5)
+      i18n (~> 0.6, >= 0.6.4)
+      multi_json (~> 1.0)
+    addressable (2.8.7)
+      public_suffix (>= 2.0.2, < 7.0)
+    airbrussh (1.5.3)
+      sshkit (>= 1.6.1, != 1.7.0)
+    backports (3.25.0)
+    base64 (0.2.0)
+    bcrypt (3.1.20)
+    bcrypt_pbkdf (1.1.1)
+    bigdecimal (1.4.2)
+    builder (3.3.0)
+    capistrano (3.19.1)
+      airbrussh (>= 1.0.0)
+      i18n
+      rake (>= 10.0.0)
+      sshkit (>= 1.9.0)
+    capistrano-bundler (2.1.1)
+      capistrano (~> 3.1)
+    capistrano-locally (0.3.0)
+      capistrano (~> 3.0)
+    capistrano-rbenv (2.2.0)
+      capistrano (~> 3.1)
+      sshkit (~> 1.3)
+    coderay (1.1.3)
+    concurrent-ruby (1.3.4)
+    connection_pool (2.4.1)
+    crack (1.0.0)
+      bigdecimal
+      rexml
+    cube-ruby (0.0.3)
+    dante (0.2.0)
+    date (3.3.4)
+    declarative (0.0.20)
+    docile (1.4.1)
+    domain_name (0.6.20240107)
+    ed25519 (1.3.0)
+    faraday (1.10.3)
+      faraday-em_http (~> 1.0)
+      faraday-em_synchrony (~> 1.0)
+      faraday-excon (~> 1.1)
+      faraday-httpclient (~> 1.0)
+      faraday-multipart (~> 1.0)
+      faraday-net_http (~> 1.0)
+      faraday-net_http_persistent (~> 1.0)
+      faraday-patron (~> 1.0)
+      faraday-rack (~> 1.0)
+      faraday-retry (~> 1.0)
+      ruby2_keywords (>= 0.0.4)
+    faraday-em_http (1.0.0)
+    faraday-em_synchrony (1.0.0)
+    faraday-excon (1.1.0)
+    faraday-httpclient (1.0.1)
+    faraday-multipart (1.0.4)
+      multipart-post (~> 2)
+    faraday-net_http (1.0.2)
+    faraday-net_http_persistent (1.2.0)
+    faraday-patron (1.0.0)
+    faraday-rack (1.0.0)
+    faraday-retry (1.0.3)
+    ffi (1.17.0)
+    gapic-common (0.21.1)
+      faraday (>= 1.9, < 3.a)
+      faraday-retry (>= 1.0, < 3.a)
+      google-protobuf (~> 3.18)
+      googleapis-common-protos (>= 1.4.0, < 2.a)
+      googleapis-common-protos-types (>= 1.11.0, < 2.a)
+      googleauth (~> 1.9)
+      grpc (~> 1.59)
+    get_process_mem (0.2.7)
+      ffi (~> 1.0)
+    google-analytics-data (0.6.1)
+      google-analytics-data-v1beta (>= 0.11, < 2.a)
+      google-cloud-core (~> 1.6)
+    google-analytics-data-v1beta (0.13.1)
+      gapic-common (>= 0.21.1, < 2.a)
+      google-cloud-errors (~> 1.0)
+    google-apis-analytics_v3 (0.16.0)
+      google-apis-core (>= 0.15.0, < 2.a)
+    google-apis-core (0.15.0)
+      addressable (~> 2.5, >= 2.5.1)
+      googleauth (~> 1.9)
+      httpclient (>= 2.8.1, < 3.a)
+      mini_mime (~> 1.0)
+      representable (~> 3.0)
+      retriable (>= 2.0, < 4.a)
+      rexml
+    google-cloud-core (1.7.1)
+      google-cloud-env (>= 1.0, < 3.a)
+      google-cloud-errors (~> 1.0)
+    google-cloud-env (2.1.1)
+      faraday (>= 1.0, < 3.a)
+    google-cloud-errors (1.4.0)
+    google-protobuf (3.25.3)
+    googleapis-common-protos (1.6.0)
+      google-protobuf (>= 3.18, < 5.a)
+      googleapis-common-protos-types (~> 1.7)
+      grpc (~> 1.41)
+    googleapis-common-protos-types (1.16.0)
+      google-protobuf (>= 3.18, < 5.a)
+    googleauth (1.11.0)
+      faraday (>= 1.0, < 3.a)
+      google-cloud-env (~> 2.1)
+      jwt (>= 1.4, < 3.0)
+      multi_json (~> 1.11)
+      os (>= 0.9, < 2.0)
+      signet (>= 0.16, < 2.a)
+    grpc (1.65.2)
+      google-protobuf (>= 3.25, < 5.0)
+      googleapis-common-protos-types (~> 1.0)
+    haml (5.2.2)
+      temple (>= 0.8.0)
+      tilt
+    hashdiff (1.1.1)
+    htmlentities (4.3.4)
+    http-accept (1.7.0)
+    http-cookie (1.0.7)
+      domain_name (~> 0.5)
+    httpclient (2.8.3)
+    i18n (0.9.5)
+      concurrent-ruby (~> 1.0)
+    json (2.7.2)
+    json-ld (3.0.2)
+      multi_json (~> 1.12)
+      rdf (>= 2.2.8, < 4.0)
+    json-schema (2.8.1)
+      addressable (>= 2.4)
+    jwt (2.9.0)
+      base64
+    kgio (2.11.4)
+    libxml-ruby (5.0.3)
+    link_header (0.0.8)
+    logger (1.6.1)
+    macaddr (1.7.2)
+      systemu (~> 2.6.5)
+    mail (2.8.1)
+      mini_mime (>= 0.1.1)
+      net-imap
+      net-pop
+      net-smtp
+    method_source (1.1.0)
+    mime-types (3.5.2)
+      mime-types-data (~> 3.2015)
+    mime-types-data (3.2024.0903)
+    mini_mime (1.1.5)
+    minitest (4.7.5)
+    minitest-stub_any_instance (1.0.3)
+    mlanett-redis-lock (0.2.7)
+      redis
+    multi_json (1.15.0)
+    multipart-post (2.4.1)
+    net-http-persistent (4.0.4)
+      connection_pool (~> 2.2)
+    net-imap (0.4.16)
+      date
+      net-protocol
+    net-pop (0.1.2)
+      net-protocol
+    net-protocol (0.2.2)
+      timeout
+    net-scp (4.0.0)
+      net-ssh (>= 2.6.5, < 8.0.0)
+    net-sftp (4.0.0)
+      net-ssh (>= 5.0.0, < 8.0.0)
+    net-smtp (0.5.0)
+      net-protocol
+    net-ssh (7.2.3)
+    netrc (0.11.0)
+    newrelic_rpm (9.13.0)
+    oj (3.16.1)
+    omni_logger (0.1.4)
+      logger
+    os (1.1.4)
+    ostruct (0.6.0)
+    parallel (1.26.3)
+    parseconfig (1.1.2)
+    pony (1.13.1)
+      mail (>= 2.0)
+    pry (0.14.2)
+      coderay (~> 1.1)
+      method_source (~> 1.0)
+    public_suffix (5.1.1)
+    rack (1.6.13)
+    rack-accept (0.4.5)
+      rack (>= 0.4)
+    rack-attack (6.6.1)
+      rack (>= 1.0, < 3)
+    rack-cache (1.13.0)
+      rack (>= 0.4)
+    rack-cors (1.0.6)
+      rack (>= 1.6.0)
+    rack-mini-profiler (3.3.1)
+      rack (>= 1.2.0)
+    rack-protection (1.5.5)
+      rack
+    rack-test (2.1.0)
+      rack (>= 1.3)
+    rack-timeout (0.7.0)
+    raindrops (0.20.1)
+    rake (10.5.0)
+    rdf (3.2.11)
+      link_header (~> 0.0, >= 0.0.8)
+    rdf-raptor (3.2.0)
+      ffi (~> 1.15)
+      rdf (~> 3.2)
+    rdf-rdfxml (3.2.2)
+      builder (~> 3.2)
+      htmlentities (~> 4.3)
+      rdf (~> 3.2)
+      rdf-xsd (~> 3.2)
+    rdf-vocab (3.2.7)
+      rdf (~> 3.2, >= 3.2.4)
+    rdf-xsd (3.2.1)
+      rdf (~> 3.2)
+      rexml (~> 3.2)
+    redcarpet (3.6.0)
+    redis (5.3.0)
+      redis-client (>= 0.22.0)
+    redis-client (0.22.2)
+      connection_pool
+    redis-rack-cache (2.2.1)
+      rack-cache (>= 1.10, < 2)
+      redis-store (>= 1.6, < 2)
+    redis-store (1.11.0)
+      redis (>= 4, < 6)
+    representable (3.2.0)
+      declarative (< 0.1.0)
+      trailblazer-option (>= 0.1.1, < 0.2.0)
+      uber (< 0.2.0)
+    request_store (1.7.0)
+      rack (>= 1.4)
+    rest-client (2.1.0)
+      http-accept (>= 1.7.0, < 2.0)
+      http-cookie (>= 1.0.2, < 2.0)
+      mime-types (>= 1.16, < 4.0)
+      netrc (~> 0.8)
+    retriable (3.1.2)
+    rexml (3.3.7)
+    rsolr (2.6.0)
+      builder (>= 2.1.2)
+      faraday (>= 0.9, < 3, != 2.0.0)
+    ruby-xxHash (0.4.0.2)
+    ruby2_keywords (0.0.5)
+    rubyzip (2.3.2)
+    rufus-scheduler (2.0.24)
+      tzinfo (>= 0.3.22)
+    signet (0.19.0)
+      addressable (~> 2.8)
+      faraday (>= 0.17.5, < 3.a)
+      jwt (>= 1.5, < 3.0)
+      multi_json (~> 1.10)
+    simplecov (0.22.0)
+      docile (~> 1.1)
+      simplecov-html (~> 0.11)
+      simplecov_json_formatter (~> 0.1)
+    simplecov-cobertura (2.1.0)
+      rexml
+      simplecov (~> 0.19)
+    simplecov-html (0.13.1)
+    simplecov_json_formatter (0.1.4)
+    sinatra (1.4.8)
+      rack (~> 1.5)
+      rack-protection (~> 1.4)
+      tilt (>= 1.3, < 3)
+    sinatra-advanced-routes (0.5.3)
+      sinatra (~> 1.0)
+    sinatra-contrib (1.4.7)
+      backports (>= 2.0)
+      multi_json
+      rack-protection
+      rack-test
+      sinatra (~> 1.4.0)
+      tilt (>= 1.3, < 3)
+    sshkit (1.23.1)
+      base64
+      net-scp (>= 1.1.2)
+      net-sftp (>= 2.1.2)
+      net-ssh (>= 2.8.0)
+      ostruct
+    systemu (2.6.5)
+    temple (0.10.3)
+    tilt (2.4.0)
+    timeout (0.4.1)
+    trailblazer-option (0.1.2)
+    tzinfo (2.0.6)
+      concurrent-ruby (~> 1.0)
+    uber (0.1.0)
+    unicorn (6.1.0)
+      kgio (~> 2.6)
+      raindrops (~> 0.7)
+    unicorn-worker-killer (0.4.5)
+      get_process_mem (~> 0)
+      unicorn (>= 4, < 7)
+    uuid (2.3.9)
+      macaddr (~> 1.0)
+    webmock (3.19.1)
+      addressable (>= 2.8.0)
+      crack (>= 0.3.2)
+      hashdiff (>= 0.4.0, < 2.0.0)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  activesupport (~> 3.2)
+  bcrypt_pbkdf (>= 1.0, < 2.0)
+  bigdecimal (= 1.4.2)
+  capistrano (~> 3)
+  capistrano-bundler
+  capistrano-locally
+  capistrano-rbenv
+  cube-ruby
+  ed25519 (>= 1.2, < 2.0)
+  faraday (~> 1.9)
+  ffi
+  goo!
+  google-apis-core (= 0.15.0)
+  google-protobuf (= 3.25.3)
+  haml (~> 5.2.2)
+  json-ld
+  json-schema (~> 2.0)
+  minitest (~> 4.0)
+  minitest-stub_any_instance
+  multi_json (~> 1.0)
+  ncbo_annotator!
+  ncbo_cron!
+  ncbo_ontology_recommender!
+  newrelic_rpm
+  oj
+  ontologies_linked_data!
+  parallel
+  parseconfig
+  pry
+  rack
+  rack-accept (~> 0.4)
+  rack-attack (~> 6.6.1)
+  rack-cache (~> 1.13.0)
+  rack-cors
+  rack-mini-profiler
+  rack-post-body-to-params!
+  rack-test
+  rack-timeout
+  rake (~> 10.0)
+  redcarpet
+  redis
+  redis-rack-cache (~> 2.0)
+  redis-store (~> 1.10)
+  request_store
+  shotgun!
+  simplecov
+  simplecov-cobertura
+  sinatra (~> 1.0)
+  sinatra-advanced-routes
+  sinatra-contrib (~> 1.0)
+  sparql-client!
+  unicorn
+  unicorn-worker-killer
+  webmock (~> 3.19.1)
+
+BUNDLED WITH
+   2.1.4