From 3d6f0cd5ee301e65549f084467a2ab2c68b87a46 Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Wed, 8 Jun 2022 14:38:22 +0100 Subject: [PATCH 1/8] Bump omero-blitz, omero-common-test and omero-gateway versions --- etc/omero.properties | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/etc/omero.properties b/etc/omero.properties index b0a06895f69..24b9bb84e67 100644 --- a/etc/omero.properties +++ b/etc/omero.properties @@ -208,9 +208,9 @@ versions.omero-scripts-url=${versions.omero-pypi} ### ## Internal dependencies -versions.omero-blitz=5.5.10 -versions.omero-common-test=5.5.9 -versions.omero-gateway=5.6.9 +versions.omero-blitz=5.5.12 +versions.omero-common-test=5.5.10 +versions.omero-gateway=5.6.10 versions.omero-scripts=5.6.2 versions.OMEZarrReader=0.2.0 ## Global overrides, if empty ignored From e4753ffb7a014cffca3f930b27ef82d79028f896 Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Wed, 8 Jun 2022 15:25:43 +0100 Subject: [PATCH 2/8] Add new changelog entry for OMERO.server 5.6.5 release --- history.rst | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/history.rst b/history.rst index 57317cff23a..9c62a8d9359 100644 --- a/history.rst +++ b/history.rst @@ -5,6 +5,35 @@ OMERO version history ===================== +5.6.5 (June 2022) +------------------ + +This release includes the following upgrade of the OMERO.server Java components: + +- omero-gateway-java 5.6.10 +- omero-blitz 5.5.12 +- omero-server 5.6.4 +- omero-renderer 5.5.12 +- omero-romio 5.5.12 +- omero-common 5.5.12 +- omero-model 5.5.12 + + +Improvements include: + +- a new server configuration allowing to control the pyramidal requirement for floating-point images +- an upgrade of Bio-Formats to version 6.10.0 +- the inclusion of the experimental OMEZarrReader version 0.2.0 for reading OME-NGFF data + +**Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please +see the upgrade guide for further information. + +This version of the OMERO.server has been tested with: + +- OMERO.py 5.11.2 +- OMERO.web 5.14.1 +- OMERO.dropbox 5.6.2 + 5.6.4 (April 2022) ------------------ From 572355e2a71ce18e5586131f393746b5400ac4d7 Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Wed, 8 Jun 2022 15:31:12 +0100 Subject: [PATCH 3/8] Adjust versions of omero-* components --- history.rst | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/history.rst b/history.rst index 9c62a8d9359..ab082e6489a 100644 --- a/history.rst +++ b/history.rst @@ -13,10 +13,10 @@ This release includes the following upgrade of the OMERO.server Java components: - omero-gateway-java 5.6.10 - omero-blitz 5.5.12 - omero-server 5.6.4 -- omero-renderer 5.5.12 -- omero-romio 5.5.12 -- omero-common 5.5.12 -- omero-model 5.5.12 +- omero-renderer 5.5.10 +- omero-romio 5.7.0 +- omero-common 5.5.10 +- omero-model 5.6.7 Improvements include: From ab5bfe3fef782260b25e6311b6eddf1cb4be5a3c Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Thu, 23 Jun 2022 11:38:13 +0100 Subject: [PATCH 4/8] Remove mention of OMEZarrReader in the release notes --- history.rst | 1 - 1 file changed, 1 deletion(-) diff --git a/history.rst b/history.rst index ab082e6489a..2b7db513148 100644 --- a/history.rst +++ b/history.rst @@ -23,7 +23,6 @@ Improvements include: - a new server configuration allowing to control the pyramidal requirement for floating-point images - an upgrade of Bio-Formats to version 6.10.0 -- the inclusion of the experimental OMEZarrReader version 0.2.0 for reading OME-NGFF data **Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please see the upgrade guide for further information. From ded5b127323226947bc1a30dcde29aa07a14326a Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Mon, 27 Jun 2022 10:57:09 +0100 Subject: [PATCH 5/8] Revert "Remove mention of OMEZarrReader in the release notes" This reverts commit ab5bfe3fef782260b25e6311b6eddf1cb4be5a3c. --- history.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/history.rst b/history.rst index 2b7db513148..ab082e6489a 100644 --- a/history.rst +++ b/history.rst @@ -23,6 +23,7 @@ Improvements include: - a new server configuration allowing to control the pyramidal requirement for floating-point images - an upgrade of Bio-Formats to version 6.10.0 +- the inclusion of the experimental OMEZarrReader version 0.2.0 for reading OME-NGFF data **Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please see the upgrade guide for further information. From 2aa8bcda9cd0638224ea530e967fa342392cdd16 Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Mon, 27 Jun 2022 10:59:38 +0100 Subject: [PATCH 6/8] Bump OMEZarrReader to 0.3.0 --- etc/omero.properties | 2 +- history.rst | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/etc/omero.properties b/etc/omero.properties index 24b9bb84e67..28d73c166ec 100644 --- a/etc/omero.properties +++ b/etc/omero.properties @@ -212,6 +212,6 @@ versions.omero-blitz=5.5.12 versions.omero-common-test=5.5.10 versions.omero-gateway=5.6.10 versions.omero-scripts=5.6.2 -versions.OMEZarrReader=0.2.0 +versions.OMEZarrReader=0.3.0 ## Global overrides, if empty ignored versions.bioformats= diff --git a/history.rst b/history.rst index ab082e6489a..b18ce46da92 100644 --- a/history.rst +++ b/history.rst @@ -23,7 +23,7 @@ Improvements include: - a new server configuration allowing to control the pyramidal requirement for floating-point images - an upgrade of Bio-Formats to version 6.10.0 -- the inclusion of the experimental OMEZarrReader version 0.2.0 for reading OME-NGFF data +- the inclusion of the OMEZarrReader version 0.3.0 for reading OME-NGFF data **Note:** This upgrade will invalidate the Bio-Formats Memoizer cache. Please see the upgrade guide for further information. From 9464093100ba42309f69660066d7b0cf83f35291 Mon Sep 17 00:00:00 2001 From: Jean-Marie Burel Date: Thu, 9 Jun 2022 10:44:08 +0100 Subject: [PATCH 7/8] rebuild --- .github/workflows/source_build.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/source_build.yml b/.github/workflows/source_build.yml index 4f97849a152..067f29d6ce5 100644 --- a/.github/workflows/source_build.yml +++ b/.github/workflows/source_build.yml @@ -18,3 +18,5 @@ jobs: flake8 . - name: Build run: ./build.py + - name: Rebuild + run: ./build.py clean && ./build.py From cd7bd126795eb803856cb4539f008153ee42204a Mon Sep 17 00:00:00 2001 From: Sebastien Besson Date: Mon, 27 Jun 2022 13:47:24 +0100 Subject: [PATCH 8/8] Also update omero-scripts to version 5.7.0 --- etc/omero.properties | 2 +- history.rst | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/etc/omero.properties b/etc/omero.properties index 28d73c166ec..b0b2ca51502 100644 --- a/etc/omero.properties +++ b/etc/omero.properties @@ -211,7 +211,7 @@ versions.omero-scripts-url=${versions.omero-pypi} versions.omero-blitz=5.5.12 versions.omero-common-test=5.5.10 versions.omero-gateway=5.6.10 -versions.omero-scripts=5.6.2 +versions.omero-scripts=5.7.0 versions.OMEZarrReader=0.3.0 ## Global overrides, if empty ignored versions.bioformats= diff --git a/history.rst b/history.rst index b18ce46da92..6e105e76160 100644 --- a/history.rst +++ b/history.rst @@ -18,6 +18,7 @@ This release includes the following upgrade of the OMERO.server Java components: - omero-common 5.5.10 - omero-model 5.6.7 +as well as the upgrade of omero-scripts to version 5.7.0. Improvements include: