diff --git a/latest/index.bs b/latest/index.bs index e82eee26..1895fafc 100644 --- a/latest/index.bs +++ b/latest/index.bs @@ -108,7 +108,7 @@ Images {#image-layout} The following layout describes the expected Zarr hierarchy for images with multiple levels of resolutions and optionally associated labels. -``` +
. # Root folder, potentially in S3, │ # with a flat list of images by image ID. │ @@ -153,7 +153,9 @@ multiple levels of resolutions and optionally associated labels. ├── 0 # Each multiscale level is stored as a separate Zarr array, as above, but only integer values │ ... # are supported. └── n -``` ++ + High-content screening {#hcs-layout} ------------------------------------ @@ -170,7 +172,7 @@ dataset. Three groups must be defined above the images: [plate specification](#plate-md) -``` +
. # Root folder, potentially in S3, │ └── 5966.zarr # One plate (id=5966) converted to Zarr @@ -197,7 +199,7 @@ dataset. Three groups must be defined above the images: │ └── 12 ├── ... # Rows └── H -``` +Metadata {#metadata} ==================== @@ -344,10 +346,10 @@ should ignore all except the _last_ entry. Some implementations may represent overlapping labels by using a specially assigned value, for example the highest integer available in the pixel range. -The `properties` key defines a list of JSON objects which also describes the unique -label values. Each entry in the list MUST contain the key "label-value" with the -pixel value for that label. Additionally, an arbitrary number of key-value pairs -MAY be present for each label value denoting associated metadata. Not all label +The `properties` key defines a list of JSON objects which also describes the unique +label values. Each entry in the list MUST contain the key "label-value" with the +pixel value for that label. Additionally, an arbitrary number of key-value pairs +MAY be present for each label value denoting associated metadata. Not all label values must share the same key-value pairs within the properties list. The `source` key is an optional dictionary which contains information on the @@ -428,7 +430,7 @@ custom attributes of the plate group under the `plate` key.