CHANGES

version 1.1.1
- Removed depreciated EBImage functions
- Improved plotting functions
- Code refactor 
- Updated package description and title

version 1.0.4
- Bug fixes related to processing image using reference

version 1.0.3
- Converted plot and summary functions to S3 
- Added colony-based warnings and plate based warnings for touching, small and low circularity colonies
- Finer grain rotation angle, resolution of 0.2 degrees instead of previous 1 degree
- Updated documentation and website

version 1.0.2
- Reduced two thresholding methods to one
- Added progress bar
- Changed estimate window function
- Added demo function
- Bug fixes
- Updated documentation

version 1.0.1
- Changed rotation to a more robust method which uses radon transform
- Fixed row/column bug where rows and columns were switched in the output
- Removed smoothing for intensity profiles and added other preprocessing steps

version 1.1.3
- Added support for fixed peaks to be defined
- Added dilation of colonies for fitting bounds (useful for spotted colonies)