From 88e0ecb95f42293f40fb36acd869585d90424c21 Mon Sep 17 00:00:00 2001
From: Alex Kerney <abk@mac.com>
Date: Tue, 16 Aug 2022 13:46:19 -0400
Subject: [PATCH] Use Rprofile.site

---
 r/Dockerfile    | 4 +---
 r/Rprofile.site | 5 +++++
 2 files changed, 6 insertions(+), 3 deletions(-)
 create mode 100644 r/Rprofile.site

diff --git a/r/Dockerfile b/r/Dockerfile
index af86ab4..969674b 100644
--- a/r/Dockerfile
+++ b/r/Dockerfile
@@ -92,13 +92,11 @@ RUN Rscript -e "remotes::install_cran('assertthat', dependencies=FALSE, upgrade_
     Rscript -e "remotes::install_github('kwstat/pals', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)"
 
 COPY CONDARC ./.condarc
+COPY Rprofile.site /opt/conda/lib/R/etc/
 
 ENV PATH /usr/lib/rstudio-server/bin/:${PATH}
 
 ENV LD_LIBRARY_PATH=${CONDA_DIR}/lib
-ENV PROJ_LIB=${CONDA_DIR}/share/proj
-ENV GDAL_DATA=${CONDA_DIR}/share/gdal
-ENV GDAL_DRIVER_PATH=${CONDA_DIR}/lib/gdalplugins
 
 # USER root
 # RUN chown -R jovyan ${CONDA_DIR}
diff --git a/r/Rprofile.site b/r/Rprofile.site
new file mode 100644
index 0000000..3d92622
--- /dev/null
+++ b/r/Rprofile.site
@@ -0,0 +1,5 @@
+local({
+    Sys.setenv(PROJ_LIB="/opt/conda/share/proj")
+    Sys.setenv(GDAL_DATA="/opt/conda/share/gdal")
+    Sys.setenv(GDAL_DRIVER_PATH="/opt/conda/lib/gdalplugins")
+})