From d9e83802e788dc38ec9d259a85d2d7498a889b68 Mon Sep 17 00:00:00 2001 From: teresa-m Date: Wed, 9 Oct 2024 15:06:32 +0000 Subject: [PATCH] updated deseq2 paramter selection --- topics/transcriptomics/tutorials/ref-based/tutorial.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/topics/transcriptomics/tutorials/ref-based/tutorial.md b/topics/transcriptomics/tutorials/ref-based/tutorial.md index 47b1d68c3ccec9..01db920c878c04 100644 --- a/topics/transcriptomics/tutorials/ref-based/tutorial.md +++ b/topics/transcriptomics/tutorials/ref-based/tutorial.md @@ -1489,6 +1489,8 @@ We can now run **DESeq2**: > - In *"Count file(s)"*: `Select all the single-end count files (GSM461176, GSM461179, GSM461182)` > - *"Files have header?"*: `Yes` > - *"Choice of Input data"*: `Count data (e.g. from HTSeq-count, featureCounts or StringTie)` +> - In *"Advanced options"*: +> - *"Use beta priors"*: `Yes` > - In *"Output options"*: > - *"Output selector"*: `Generate plots for visualizing the analysis results`, `Output normalised counts` >