nsem.job.sample

#!/bin/sh -l

#SBATCH -A coastal            # -A, --account=name          charge job to specified account
##SBATCH -q debug              # coastal group can only submit to this Q
#SBATCH -e slurm.error        # -e, --error=err             file for batch script's standard error
#SBATCH --ignore-pbs          # --ignore-pbs            Ignore #PBS options in the batch script
#SBATCH -J nsem               # -J, --job-name=jobname      name of job
                              # (type = block|cyclic|arbitrary)
#SBATCH                       # --mail-user=user        who to send email notification for job state
                              # changes
#SBATCH --ntasks-per-node=34  # --ntasks-per-node=n     number of tasks to invoke on each node
#SBATCH -N 33                 # -N, --nodes=N           number of nodes on which to run (N = min[-max])
#SBATCH --parsable            # --parsable              outputs only the jobid and cluster name (if present),
                              # separated by semicolon, only on successful submission.
#SBATCH -t 420                # -t, --time=minutes          time limit

############################### main - to run: $sbatch nsem.job ##########################
set -x
echo $SLURM_SUBMIT_DIR            # (in Slurm, jobs start in "current dir")       
echo $SLURM_JOBID                                                      
echo $SLURM_JOB_NAME
echo $SLURM_NNODES                                                     
echo $SLURM_TASKS_PER_NODE

# PBS_NODEFILE:  There is not a direct equivalent for this, but 
echo $SLURM_NODELIST              # give you the list of assigned nodes.

# cd $SLURM_SUBMIT_DIR
echo "STARTING THE JOB AT"
date

# change the ROOTDIR to absolute path of where your pulled the 
# NEMS and NEMS Applications
cp -fv <ROOTDIR>/NEMS/exe/NEMS.x NEMS.x
source <ROOTDIR>/NEMS/src/conf/modules.nems
srun ./NEMS.x
date