Genotype List restricted to perfect matching genotypes

[jpollack-nmdp]

The genotype list basically should be restricted to the perfect matching genotypes. In NGS this is not feasible, since in many cases intron differences with the alleles are found, or with extrapolated reference sequenced. We think that the list should be restricted to coding regions, and all differences in introns should be described. How should these differences be described? -- Erik Rosemuller