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run_exam2m.py
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from charm_header import *
num_nodes=32
max_nodes=64
ppn = ppnmap[key]
proc_per_node=proc_per_node_map[key]
proj=True
stats=False
prev=False
debug=False
print "key is " + key
print " basedir is " + basedirs[key]
exam2mdir=exam2mdirs[key]
if(prev):
exam2mdir += "_prev"
buildName = "build"
if(debug):
buildName += "_debug"
if(proj):
buildName += "_proj"
def getScriptBeg(num_nodes, mins, jobname, outputName):
if(jobscheds[key] == "pbs"):
scriptbeg = "#!/bin/bash\n";
scriptbeg += "#PBS -N " + jobname + "\n";
scriptbeg += "#PBS -l walltime=00:" + str(mins) + ":00\n";
scriptbeg += "#PBS -l nodes=" + str(num_nodes) + ":ppn=24\n";
elif(jobscheds[key] == "slurm" and key=="cori"):
scriptbeg = "#!/bin/bash -l\n";
scriptbeg += "#SBATCH -q regular\n";
scriptbeg += "#SBATCH -t 00:" + str(mins) + ":00\n";
scriptbeg += "#SBATCH -N "+ str(num_nodes) + "\n";
scriptbeg += "#SBATCH --output="+ outputName + "\n";
scriptbeg += "#SBATCH --constraint=haswell" + "\n";
scriptbeg += "#SBATCH --job-name=" + jobname + "\n";
elif(jobscheds[key] == "slurm" and key=="frontera"):
scriptbeg = "#!/bin/bash -l\n";
scriptbeg += "#SBATCH -p normal\n";
scriptbeg += "#SBATCH -t 00:" + str(mins) + ":00\n";
scriptbeg += "#SBATCH -N "+ str(num_nodes) + "\n";
scriptbeg += "#SBATCH --output="+ outputName + "\n";
scriptbeg += "#SBATCH --job-name=" + jobname + "\n";
elif(jobscheds[key] == "slurm" and key=="bridges"):
scriptbeg = "#!/bin/bash\n";
scriptbeg += "#SBATCH -p RM\n";
scriptbeg += "#SBATCH -t 00:" + str(mins) + ":00\n";
scriptbeg += "#SBATCH -N "+ str(num_nodes) + "\n";
elif(jobscheds[key] == "slurm" and key=="hpcadv"):
scriptbeg = "#!/bin/bash\n";
scriptbeg += "#SBATCH -p thor\n";
scriptbeg += "#SBATCH -t 00:" + str(mins) + ":00\n";
scriptbeg += "#SBATCH -N "+ str(num_nodes) + "\n";
return scriptbeg
def getScriptEnd(num_nodes,proc_per_node, mode):
fileContents = "";
if(key == "iforge"):
fileContents += "~/gennodelist2.pl $PBS_NODEFILE $PBS_JOBID "+ str(num_nodes * ppn) + " _" + scriptname + "\n";
elif(key == "golub"):
# do nothing
pass
else:
nval = str(getNValue(num_nodes, proc_per_node, archopts[smp_index]))
tasks_per_node = str(getTasksPerNodeValue(num_nodes, proc_per_node, archopts[smp_index]))
cval = str(getCValue(num_nodes, proc_per_node, archopts[smp_index]))
fileContents += "#SBATCH -n "+nval+"\n";
fileContents += "#SBATCH --ntasks-per-node="+tasks_per_node+"\n";
return fileContents;
def getSmpType(basebuild):
#if key=="bridges":
# return "regular"
#elif key=="iforge":
# if basebuild == "mpi":
# return "weird"
return "regular"
def attachPath(bcastFullDir):
if key=="iforge" or key=="hpcadv" or key=="golub":
return bcastFullDir
else:
return ""
def getRunCommand(num_nodes, voxLen):
runComm = ""
execDir = exam2mdir + "/" + buildName
execDir += "/Main/"
outputDir = exam2mdir + "/../exam2mOutputFiles/projResults/";
traceroot = "exam2m_mpi_nonsmp_sphere_cube_" + str(num_nodes) + "_" + voxLen + "_projdir";
execName = "exam2m ";
args = exam2mdir + "/../exam2mInputFiles/sphere_full_48M.exo " + exam2mdir + "/../exam2mInputFiles/unitcube_48M.exo " + voxLen + " "
#args = exam2mdir + "/../exam2mInputFiles/sphere_full_48M.exo " + exam2mdir + "/../exam2mInputFiles/unitcube_48M.exo "
postargs = ""
if(stats):
postargs += "+printTetStats +printVoxCount"
if(proj):
postargs += " +traceroot " + outputDir + traceroot
postpostargs = ""
execPath = execDir + execName
smp_index = 0;
# run bcast
pval = str(getPValue(num_nodes, proc_per_node, archopts[smp_index]))
nval = str(getNValue(num_nodes, proc_per_node, archopts[smp_index]))
cval = str(getCValue(num_nodes, proc_per_node, archopts[smp_index]))
runComm += "srun -n " + nval + space + " -c " + cval + space + execPath + space + args + space + postargs + space + postpostargs
#runComm += "mpirun -n " + nval + space + execPath + space + args + space + postargs + space + postpostargs
return runComm
def getPValue(num_nodes, proc_per_node, mode):
if mode == "smp":
if num_nodes == 1:
return ppn - 1
else:
p = (ppn/proc_per_node - 1)*proc_per_node*num_nodes
return p
else:
return ppn * num_nodes
def getNValue(num_nodes, proc_per_node, mode):
if mode == "smp":
if num_nodes == 1:
return 1
else:
n = proc_per_node*num_nodes
return n
else:
return ppn * num_nodes
def getCValue(num_nodes, proc_per_node, mode):
if mode == "smp":
if num_nodes == 1:
return ppn
else:
c = ppn/proc_per_node
return c;
else:
return 1;
def getTasksPerNodeValue(num_nodes, proc_per_node, mode):
if mode == "smp":
if num_nodes == 1:
return 1
else:
return proc_per_node
else:
return ppn;
def getPostArgs(num_nodes, proc_per_node, mode, smpType):
if mode == "smp":
if smpType== "regular":
if num_nodes == 1:
return " ++ppn " + str(ppn - 1) + space + " +pemap 0-"+str(ppn-2)+" +commap "+str(ppn-1)
else:
if(ppn == 24):
return " ++ppn " + str(ppn/proc_per_node - 1) + space + " +pemap 0-10,12-22 +commap 11,23"
elif(ppn == 28):
return " ++ppn " + str(ppn/proc_per_node - 1) + space + " +pemap 0-12,14-26 +commap 13,27"
elif(ppn == 32):
return " ++ppn " + str(ppn/proc_per_node - 1) + space + " +pemap 0-14,16-30 +commap 15,31"
else:
if mode == "smp":
if num_nodes == 1:
return " ++ppn " + str(ppn - 1) + space + " +pemap 0-22 +commap 23"
else:
postArgStr = " ++ppn " + str(ppn/proc_per_node - 1) + space;
commArgStr = " +commap ";
postArgStr += " +pemap "
index = 0;
peMapVal = (ppn/proc_per_node - 1)
while((index + peMapVal - 1) < num_nodes*ppn):
postArgStr += str(index) + hyphen + str(index + peMapVal - 1) + ",";
index = index + peMapVal;
commArgStr += str(index) + ","
index = index + 1;
postArgStr += " " + commArgStr
return postArgStr
else:
return ""
def getPostPostArgs(basebuild, mode, append):
if key == 'iforge':
if basebuild == 'verbs':
if mode == 'smp':
return "++nodelist ~/.nodelist" + append + ".smp"
else:
return "++nodelist ~/nodelist" + append
if key == 'hpcadv' or 'golub':
if basebuild == 'verbs':
return "++mpiexec"
return ""
while num_nodes <= max_nodes:
voxLens = [0.01, 0.025, 0.05, 0.075]
#voxLens = [0.01, 0.025, 0.075]
#voxLens = [0.05]
for vox in voxLens:
voxLen = str(vox)
smp_index=0
scriptname = "exam2m_mpi_nonsmp_sphere_cube_" + str(num_nodes) + "_" + voxLen
if(debug):
scriptname += "_debug"
if(prev):
scriptname += "_prev"
if(stats):
scriptname += "_stats"
folderName = "newResults"
if(proj):
scriptname += "_proj"
folderName = "projResults"
scriptname += "_script";
outputDir = exam2mdir + "/../exam2mOutputFiles/" + folderName + "/"
outputName = outputDir + "exam2m_mpi_nonsmp_sphere_cube_" + str(num_nodes) + "_" + voxLen
if(debug):
outputName += "_debug"
if(prev):
outputName += "_prev"
if(stats):
outputName += "_stats"
if(proj):
outputName += "_proj"
outputName += "_result_%j.out";
fileContents = getScriptBeg(num_nodes, 5, scriptname, outputName);
fileContents += getScriptEnd(num_nodes, proc_per_node, archopts[0]);
fileContents += "export LD_LIBRARY_PATH=" + exam2mdir + "/external/" + buildName + "/mpi-nonsmp"
#if(proj):
# fileContents += "-proj"
fileContents += "/tpls/lib:$LD_LIBRARY_PATH" + "\n";
fileContents += "cd " + exam2mdir + "/" + buildName + "\n"
if(proj):
#fileContents += "-proj" + "\n"
outputDir = exam2mdir + "/../exam2mOutputFiles/projResults/";
traceroot = "exam2m_mpi_nonsmp_sphere_cube_" + str(num_nodes) + "_" + voxLen + "_projdir" + "\n"
fileContents += "mkdir " + outputDir + traceroot + "\n";
fileContents += "\n";
fileContents += "mkdir output_" + str(num_nodes) + "_" + voxLen + "\n";
fileContents += "cd output_" + str(num_nodes) + "_" + voxLen + "\n";
scriptDir = exam2mdir + "/scripts/generatedScripts/"
extraSuffix= ""
runComm = getRunCommand(num_nodes, voxLen);
fileContents += runComm + "\n\n\n\n"
print "======================================================="
print fileContents
print "======================================================="
script = open(scriptDir + scriptname, "w+");
script.write(fileContents)
sys.stdout.flush();
#os.system("sbatch "+scriptDir + scriptname)
num_nodes = num_nodes*2