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How to update to the newest WHO mutation catalogue? #97

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amolares opened this issue Apr 26, 2024 · 2 comments
Open

How to update to the newest WHO mutation catalogue? #97

amolares opened this issue Apr 26, 2024 · 2 comments

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@amolares
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Hi.

Recently, a new mutation catalogue have been released by WHO: https://github.com/GTB-tbsequencing/mutation-catalogue-2023/tree/main/Final%20Result%20Files
I wonder if there is an easy way to renew the MTBseq file https://github.com/ngs-fzb/MTBseq_source/blob/master/var/res/MTB_Resistance_Mediating.txt for to incorporating this latest news.

Many thanks for the support.

@cutpatel
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You can always add mutations which are missing or you think should be included to the file.
We will soon release a new version with improved resistance reports and summaries, which will also contain a new curated resistance database including the latest WHO list.

@ReemaSingh
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When can we expect the release of the newest version of MTBseq with the new mutation catalogue?

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