From aa116abb2f3f860695ba6c6c6bb455f9537b4218 Mon Sep 17 00:00:00 2001 From: ggabernet Date: Fri, 25 Nov 2022 14:38:52 +0100 Subject: [PATCH 1/3] rm cff from template --- nf_core/pipeline-template/CITATION.cff | 56 -------------------------- 1 file changed, 56 deletions(-) delete mode 100644 nf_core/pipeline-template/CITATION.cff diff --git a/nf_core/pipeline-template/CITATION.cff b/nf_core/pipeline-template/CITATION.cff deleted file mode 100644 index 017666c018..0000000000 --- a/nf_core/pipeline-template/CITATION.cff +++ /dev/null @@ -1,56 +0,0 @@ -cff-version: 1.2.0 -message: "If you use `nf-core tools` in your work, please cite the `nf-core` publication" -authors: - - family-names: Ewels - given-names: Philip - - family-names: Peltzer - given-names: Alexander - - family-names: Fillinger - given-names: Sven - - family-names: Patel - given-names: Harshil - - family-names: Alneberg - given-names: Johannes - - family-names: Wilm - given-names: Andreas - - family-names: Garcia - given-names: Maxime Ulysse - - family-names: Di Tommaso - given-names: Paolo - - family-names: Nahnsen - given-names: Sven -title: "The nf-core framework for community-curated bioinformatics pipelines." -version: 2.4.1 -doi: 10.1038/s41587-020-0439-x -date-released: 2022-05-16 -url: https://github.com/nf-core/tools -prefered-citation: - type: article - authors: - - family-names: Ewels - given-names: Philip - - family-names: Peltzer - given-names: Alexander - - family-names: Fillinger - given-names: Sven - - family-names: Patel - given-names: Harshil - - family-names: Alneberg - given-names: Johannes - - family-names: Wilm - given-names: Andreas - - family-names: Garcia - given-names: Maxime Ulysse - - family-names: Di Tommaso - given-names: Paolo - - family-names: Nahnsen - given-names: Sven - doi: 10.1038/s41587-020-0439-x - journal: nature biotechnology - start: 276 - end: 278 - title: "The nf-core framework for community-curated bioinformatics pipelines." - issue: 3 - volume: 38 - year: 2020 - url: https://dx.doi.org/10.1038/s41587-020-0439-x From fa2b1e19755c669fb214c1cc6869b2b368b477e6 Mon Sep 17 00:00:00 2001 From: ggabernet Date: Fri, 25 Nov 2022 14:38:57 +0100 Subject: [PATCH 2/3] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 185959e80b..988e6e8de1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ - `nextflow run --version` will now print the workflow version from the manifest and exit ([#1951](https://github.com/nf-core/tools/pull/1951)) - Add profile for running `docker` with the ARM chips (including Apple silicon) ([#1942](https://github.com/nf-core/tools/pull/1942) and [#2034](https://github.com/nf-core/tools/pull/2034)) - Flip execution order of parameter summary printing and parameter validation to prevent 'hiding' of parameter errors. +- Remove `citation.cff` file from pipeline template, to avoid that pipeline Zenodo entries reference the nf-core publication instead of the pipeline. ### Linting From a2d5a2695540e65806dc7bbc99210da5b26605a6 Mon Sep 17 00:00:00 2001 From: Gisela Gabernet Date: Mon, 28 Nov 2022 17:31:53 +0100 Subject: [PATCH 3/3] Update CHANGELOG.md Co-authored-by: Matthieu Muffato --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 988e6e8de1..e930065c82 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,7 +10,7 @@ - `nextflow run --version` will now print the workflow version from the manifest and exit ([#1951](https://github.com/nf-core/tools/pull/1951)) - Add profile for running `docker` with the ARM chips (including Apple silicon) ([#1942](https://github.com/nf-core/tools/pull/1942) and [#2034](https://github.com/nf-core/tools/pull/2034)) - Flip execution order of parameter summary printing and parameter validation to prevent 'hiding' of parameter errors. -- Remove `citation.cff` file from pipeline template, to avoid that pipeline Zenodo entries reference the nf-core publication instead of the pipeline. +- Remove `CITATION.cff` file from pipeline template, to avoid that pipeline Zenodo entries reference the nf-core publication instead of the pipeline. ### Linting