diff --git a/CHANGELOG.md b/CHANGELOG.md index 01e4572645..5e01a6ccc7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -16,6 +16,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#762](https://github.com/nf-core/sarek/pull/762) - Back to dev - [#762](https://github.com/nf-core/sarek/pull/762) - Update deepvariant module - [#773](https://github.com/nf-core/sarek/pull/773) - Sync `TEMPLATE` with `tools` `2.6` +- [#782](https://github.com/nf-core/sarek/pull/782) - Reduce scatter/gather for full size tests on AWS ### Fixed diff --git a/conf/test_full.config b/conf/test_full.config index ea5d1f4a1d..3d51e965ff 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -19,7 +19,8 @@ params { // Other params tools = 'strelka,mutect2,freebayes,ascat,manta,cnvkit,tiddit,controlfreec,vep' - split_fastq = 20000000 - intervals = 's3://nf-core-awsmegatests/sarek/input/S07604624_Padded_Agilent_SureSelectXT_allexons_V6_UTR.bed' - wes = true + split_fastq = 20000000 + intervals = 's3://nf-core-awsmegatests/sarek/input/S07604624_Padded_Agilent_SureSelectXT_allexons_V6_UTR.bed' + wes = true + nucleotides_per_second = 100000 } diff --git a/conf/test_full_germline.config b/conf/test_full_germline.config index b4803e9202..7c71cb69b5 100644 --- a/conf/test_full_germline.config +++ b/conf/test_full_germline.config @@ -21,4 +21,6 @@ params { tools = 'strelka,freebayes,haplotypecaller,deepvariant,manta,tiddit,cnvkit,vep' split_fastq = 50000000 + nucleotides_per_second = 100000 + }