From 9780f0110dde18c7be729fd41edee76a6c9bdf17 Mon Sep 17 00:00:00 2001 From: Maxime Garcia Date: Wed, 1 May 2019 17:44:09 +0200 Subject: [PATCH] update README (#1) --- README.md | 18 ++++++++++++------ 1 file changed, 12 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 4171c4be8e..3e52b0e833 100644 --- a/README.md +++ b/README.md @@ -3,11 +3,13 @@ **An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing**. +> :warning: This pipeline is a work in progress being ported to nf-core from [SciLifeLab/Sarek](https://github/SciLifeLab/Sarek) + [![Nextflow version][nextflow-badge]](https://www.nextflow.io) [![Travis build status][travis-badge]](https://travis-ci.org/nf-core/sarek) [![Install with bioconda][bioconda-badge]](http://bioconda.github.io/) -[![Docker Container available][docker-badge]](https://hub.docker.com/r/nf-core/sarek) +[![Docker Container available][docker-badge]](https://hub.docker.com/r/nfcore/sarek) [![Join us on Slack][slack-badge]](https://nfcore.slack.com/messages/CGFUX04HZ/) @@ -136,8 +138,12 @@ For further information or help, don't hesitate to get in touch on [Slack](https [National Genomics Infrastructure logo][ngi-link] [National Bioinformatics Infrastructure Sweden logo][nbis-link] -[bioconda-badge]: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=popout&logo=data:image/png;base64,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 -[docker-badge]: https://img.shields.io/docker/automated/nf-core/sarek.svg?style=popout&logo=docker -[nextflow-badge]: https://img.shields.io/badge/nextflow-%E2%89%A519.04.0-brightgreen.svg?style=popout&logo=data:image/svg+xml;base64,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 -[travis-badge]: https://img.shields.io/travis/nf-core/sarek.svg?style=popout&logo=travis -[slack-badge]: https://img.shields.io/badge/slack-nfcore/sarek-blue.svg?style=popout&logo=slack +[bioconda-badge]: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?logo=data:image/png;base64,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 +[btb-link]: https://ki.se/forskning/barntumorbanken-0 +[docker-badge]: https://img.shields.io/docker/automated/nfcore/sarek.svg?logo=docker +[nbis-link]: https://nbis.se +[nextflow-badge]: https://img.shields.io/badge/nextflow-%E2%89%A519.04.0-brightgreen.svg?logo=data:image/svg+xml;base64,PD94bWwgdmVyc2lvbj0iMS4wIiBlbmNvZGluZz0iVVRGLTgiIHN0YW5kYWxvbmU9Im5vIj8+PHN2ZyAgIHhtbG5zOmRjPSJodHRwOi8vcHVybC5vcmcvZGMvZWxlbWVudHMvMS4xLyIgICB4bWxuczpjYz0iaHR0cDovL2NyZWF0aXZlY29tbW9ucy5vcmcvbnMjIiAgIHhtbG5zOnJkZj0iaHR0cDovL3d3dy53My5vcmcvMTk5OS8wMi8yMi1yZGYtc3ludGF4LW5zIyIgICB4bWxuczpzdmc9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIiAgIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgICB4bWxuczpzb2RpcG9kaT0iaHR0cDovL3NvZGlwb2RpLnNvdXJjZWZvcmdlLm5ldC9EVEQvc29kaXBvZGktMC5kdGQiICAgeG1sbnM6aW5rc2NhcGU9Imh0dHA6Ly93d3cuaW5rc2NhcGUub3JnL25hbWVzcGFjZXMvaW5rc2NhcGUiICAgd2lkdGg9IjEyLjc5OTIyOG1tIiAgIGhlaWdodD0iMTIuODA0ODA5bW0iICAgdmlld0JveD0iMCAwIDQ1LjM1MTU5NCA0NS4zNzEzNjkiICAgaWQ9InN2Zzc2NTIiICAgdmVyc2lvbj0iMS4xIiAgIGlua3NjYXBlOnZlcnNpb249IjAuOTEgcjEzNzI1IiAgIHNvZGlwb2RpOmRvY25hbWU9Im5leHRmbG93LWZhdmljb24td2hpdGUuc3ZnIj4gIDxkZWZzICAgICBpZD0iZGVmczc2NTQiIC8+ICA8c29kaXBvZGk6bmFtZWR2aWV3ICAgICBpZD0iYmFzZSIgICAgIHBhZ2Vjb2xvcj0iI2ZmZmZmZiIgICAgIGJvcmRlcmNvbG9yPSIjNjY2NjY2IiAgICAgYm9yZGVyb3BhY2l0eT0iMS4wIiAgICAgaW5rc2NhcGU6cGFnZW9wYWNpdHk9IjAuMCIgICAgIGlua3NjYXBlOnBhZ2VzaGFkb3c9IjIiICAgICBpbmtzY2FwZTp6b29tPSI3LjkxOTU5NTkiICAgICBpbmtzY2FwZTpjeD0iMjAuMTEzMjM1IiAgICAgaW5rc2NhcGU6Y3k9IjIzLjE2MzkwOCIgICAgIGlua3NjYXBlOmRvY3VtZW50LXVuaXRzPSJweCIgICAgIGlua3NjYXBlOmN1cnJlbnQtbGF5ZXI9ImxheWVyMSIgICAgIHNob3dncmlkPSJmYWxzZSIgICAgIGZpdC1tYXJnaW4tdG9wPSIwIiAgICAgZml0LW1hcmdpbi1sZWZ0PSIwIiAgICAgZml0LW1hcmdpbi1yaWdodD0iMCIgICAgIGZpdC1tYXJnaW4tYm90dG9tPSIwIiAgICAgaW5rc2NhcGU6d2luZG93LXdpZHRoPSIxOTIwIiAgICAgaW5rc2NhcGU6d2luZG93LWhlaWdodD0iMTAxNSIgICAgIGlua3NjYXBlOndpbmRvdy14PSIwIiAgICAgaW5rc2NhcGU6d2luZG93LXk9IjAiICAgICBpbmtzY2FwZTp3aW5kb3ctbWF4aW1pemVkPSIxIiAvPiAgPG1ldGFkYXRhICAgICBpZD0ibWV0YWRhdGE3NjU3Ij4gICAgPHJkZjpSREY+ICAgICAgPGNjOldvcmsgICAgICAgICByZGY6YWJvdXQ9IiI+ICAgICAgICA8ZGM6Zm9ybWF0PmltYWdlL3N2Zyt4bWw8L2RjOmZvcm1hdD4gICAgICAgIDxkYzp0eXBlICAgICAgICAgICByZGY6cmVzb3VyY2U9Imh0dHA6Ly9wdXJsLm9yZy9kYy9kY21pdHlwZS9TdGlsbEltYWdlIiAvPiAgICAgICAgPGRjOnRpdGxlPjwvZGM6dGl0bGU+ICAgICAgPC9jYzpXb3JrPiAgICA8L3JkZjpSREY+ICA8L21ldGFkYXRhPiAgPGcgICAgIGlua3NjYXBlOmxhYmVsPSJMYXllciAxIiAgICAgaW5rc2NhcGU6Z3JvdXBtb2RlPSJsYXllciIgICAgIGlkPSJsYXllcjEiICAgICB0cmFuc2Zvcm09InRyYW5zbGF0ZSgxMTQuMTA0MzcsLTQ1Mi41MzM2NikiPiAgICA8cGF0aCAgICAgICBzdHlsZT0iZmlsbDojZmZmZmZmIiAgICAgICBkPSJtIC0xMTQuMTA0MzcsNDU1LjQ2NTYyIDAsOC44NjEzMyAwLjIwMzEzLDAuMDYwNSBjIDMuODcyOTMsMS4xMzk0MyA4LjY1MjUxLDQuMzgzMiAxMi44MDA3OCw4LjY4NzUgMC45MTM2MywwLjk0ODAxIDEuOTcyNTY0LDIuMTA2ODQgMi4zNTM1MjQsMi41NzYxOCBsIDAuNjkxNCwwLjg1MzUxIC0wLjg2OTE0LDAuNzc1MzkgYyAtNC4xOTk5MDQsMy43NDE5MyAtOC45NzE5MDQsNi43NjYzNyAtMTQuMTA1NDc0LDguOTQxNDEgLTAuMzA5NzUsMC4xMzEyNCAtMC42OTcyMiwwLjI4MTIzIC0xLjA3NDIyLDAuNDI3NzMgbCAwLDkuMzA0NjkgYyAyLjY1OTkzLC0wLjg3NzkyIDUuMzA2MzksLTEuOTc1IDguMDYwNTUsLTMuMzUxNTYgNC4yNTYyMywtMi4xMjczMiA3LjU0MzI1NCwtNC4yNTc2NCAxMS4wMzcxMTQsLTcuMTU2MjUgMC45MjU4MSwtMC43NjgwOCAxLjgyMTA5LC0xLjUwNzAyIDEuOTkwMjMsLTEuNjQyNTggMC4yNzkzMSwtMC4yMjM4NCAwLjQ5MzMyLC0wLjA1MTQgMi4zMjQyMiwxLjg3ODkxIDYuMjIyNjUsNi41NjA0MSAxMy43ODMzNywxMC43NDQ0MyAyMS45Mzk0NiwxMi4yMjI2NSBsIDAsLTguOTQxNCBjIC00Ljc5NTM3LC0xLjE5NTkgLTkuNDIwMzEsLTMuNjQ1MTEgLTEzLjI1NzgyLC03LjA2NDQ2IC0xLjY4MzUxLC0xLjUwMDA2IC00LjI4NjgxLC00LjM1MDA5IC00LjM5MjU4LC00LjgwODU5IC0wLjA2ODYsLTAuMjk3MyA1LjQ3NDgsLTUuNzA5NzcgNy4yOTQ5MywtNy4xMjMwNSAzLjQ4MjczLC0yLjcwNDI0IDYuNTg4MjUsLTQuMTIwNDIgMTAuMjc1MzksLTQuNjg1NTQgMC4wMjc1LC0wLjAwNCAwLjA1MjcsLTAuMDA4IDAuMDgwMSwtMC4wMTE3IGwgMCwtOC43NSBjIC03LjkzOTI3LDIuMDIxMTQgLTE0Ljg3MDAxLDUuODc3MzggLTIxLjUsMTEuOTQzMzYgbCAtMS42MzA4NiwxLjQ5MjE4IC0yLjk5NjEsLTMuMDA3ODEgYyAtMS42NDc1NiwtMS42NTQ3IC0zLjc0MDI1LC0zLjYwMTU3IC00LjY1MjM0LC00LjMyNjE3IC01LjAwODU1NCwtMy45Nzg5OSAtMTAuMTUyOTU0LC02LjQ5OTIzIC0xNC41NzIyNzQsLTcuMTU2MjUgeiIgICAgICAgaWQ9InBhdGg3NjIwIiAgICAgICBpbmtzY2FwZTpjb25uZWN0b3ItY3VydmF0dXJlPSIwIiAgICAgICBzb2RpcG9kaTpub2RldHlwZXM9ImNjY3NjY2NzY2Nzc2NzY2NzY3NjY2NjY2NzYyIgLz4gIDwvZz48L3N2Zz4= +[ngi-link]: https://ngisweden.scilifelab.se/ +[scilifelab-link]: https://scilifelab.se +[slack-badge]: https://img.shields.io/badge/slack-nfcore/sarek-blue.svg?logo=slack +[travis-badge]: https://img.shields.io/travis/nf-core/sarek.svg?logo=travis