diff --git a/nextflow.config b/nextflow.config index bd17146067..d92c6929f5 100644 --- a/nextflow.config +++ b/nextflow.config @@ -52,7 +52,7 @@ params { cf_coeff = 0.05 // default value for Control-FREEC cf_contamination = null // by default not specified in Control-FREEC cf_contamination_adjustment = null // by default we are not using this in Control-FREEC - cf_ploidy = "2" // you can use 2,3,4 + cf_ploidy = 2 // you can use 2,3,4 cf_window = null // by default we are not using this in Control-FREEC generate_gvcf = null // g.vcf are not produced by HaplotypeCaller by default no_strelka_bp = null // Strelka will use Manta candidateSmallIndels if available